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Table 2 Categories of sequence variations

From: Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary

 

BMa

RMa

SMa

Da

SNPs

6944767

6871283

6734038

5950027

INDELs

696029

623282

617600

451299

Total variants

7640796

7494565

7351638

6401326

Heterozygous SNPs

3196568

3443594

3722921

3314982

Homozygous SNPs

3744651

3424501

3008107

2633108

SNP transitions

4782645

4739843

4641040

4097573

SNP transversions

2165670

2134628

2096008

1854391

Multiple SNPs

3548

3188

3010

1937

Heterozygous INDELs

210860

200062

167240

144505

Homozygous INDELs

464812

406643

436692

298970

  1. aBM, Blond Mangalica; RM, Red Mangalica; SM, Swallow-belly Mangalica, D, Duroc.