Table 1 List of publications and brief description of the conditions they included, used in the comparison of transcriptional responses shown in Figure 6

kaw acetic OD 0.1 to 1 (adaptation)

0.3% w/v acetate (OD = 0.1), growth until OD = 1

WT strain, no acid

pH 3.2

Kawahata et al. [34]

kaw hydrochloric OD 0.1 to 1 (adaptation)

0.03% w/v hydrochloric acid (OD = 0.1), growth until OD = 1

WT strain, no acid

pH 2.5

Kawahata et al. [34]

kaw lactic OD 0.1 to 1 (adaptation)

0.3% w/v lactate (OD = 0.1), growth until OD = 1

WT strain, no acid

pH 2.8

Kawahata et al. [34]

kaw hydrochloric 30 m (shock)

30 min after addition of 0.03% w/v hydrochloric acid

WT strain, no acid

pH 2.6

Kawahata et al. [34]

kaw lactate 30 m (shock)

30 min after addition of 0.3% w/v lactate

WT strain, no acid

pH 2.8

Kawahata et al. [34]

kaw acetic 30 m (shock)

30 min after addition of 0.3% w/v acetate

WT strain, no acid

pH 3.3

Kawahata et al. [34]

den sorbic 0.9 mM

late exponential stage, 0.9 mM sorbate

WT strain, no acid

pH 4.5

de Nobel et al. [35]

ro artemisinic 72 h

artemisinic acid-producing strain 72 h

strain with inactivated gene 72 h

pH 5.5

Ro et al. [24]

ro Artemisinic 24 h

artemisinic acid-producing strain 24 h

strain with inactivated gene 24 h

pH 5.5

Ro et al. [24]

ro Artemisinic 48 h

artemisinic acid-producing strain 48 h

strain with inactivated gene 48 h

pH 5.5

Ro et al. [24]

moj x23h-wt23h

Xylonate production, after 23 h

WT strain, no production, after 23 h

pH 5.5

This publication

moj x47h-wt47h

Xylonate production, after 47 h

WT strain, no production, after 47 h

pH 5.5

This publication

moj x71h-wt71h

Xylonate production, after 71 h

WT strain, no production, after 47 h

pH 5.5

This publication

hir lactate human LDH

Lactate production using Human LDH 16 h

WT strain, no lactate production

pH 5

Hirasawa et al. [36]

hir lactate bovine LDH

Lactate production using Bovine LDH 16 h

WT strain, no lactate production

pH 5

Hirasawa et al. [36]

mir DHaa1 acetate acid

haa1 deletion strain, 30 min in 50 mM Acetate

haa1 deletion strain, no acid

pH 4

Mira et al. [14]

mir wt acetic acid

WT strain, 30 min in 50 mM Acetate

WT strain, no acid

pH 4

Mira et al. [14]

sch sorbate

WT strain, 20 min in 8 mM Potassium Sorbate

WT strain, no acid

Schuller et al. [10]

abb benzoate

WT strain, steady state at 0.27 mM Benzoate

WT strain, no acid

pH 5

Abbott et al. [18]

abb sorbate

WT strain, steady state at 0.47 mM Sorbate

WT strain, no acid

pH 5

Abbott et al. [18]

abb acetate

WT strain, steady state at 37.7 mM Acetate

WT strain, no acid

pH 5

Abbott et al. [18]

abb propionate

WT strain, steady state at 8.6 mM Propionate

WT strain, no acid

pH 5

Abbott et al. [18]