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Table 2 Likelihood ratio test for PAML site models within Wallaby

From: Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments

Model

Parameters

lnL

2ΔlnL (LRT)

M0

ω: = 0.65464

-1673.250363

NA

M1a

p0: 0.57003 p1: 0.42997

-1576.668729

ω0: 0.09616 ω1: 1.00000

M2a

p0: 0.49130 p1: 0.31322 p2: 0.19547

-1556.441999

M1a vs. M2a 40.45346 (p = 1.643E-09)

ω0: 0.10488 ω1: 1.00000 ω2: 3.48389

M7

p = 0.33061 q = 0.37447

-1581.277897

M8

p0 = 0.74935 p = 0.55372 q = 1.09725

-1560.301816

M7 vs. M8 41.952162 (p = 7.765E-10 )

(p1 = 0.25065) ω1 = 2.75722