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Table 3 AsRNAs detected in this study and in Wurtzel et al. (2012)[27]

From: Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa

AsRNA antisense to This study Wurtzel et al.(2012)
  P. aeruginosaPAO1 P. aeruginosaPA14
Gene name Gene function Gene Gene Name Start End Length Gene locus Gene direction TSS of asRNA
locus direction asRNA asRNA asRNA asRNA
dnaA Chromosomal replication initiator protein DnaA PA0001 > AsdnaA 1320 1784 465 PA14_00010 > 715
- Hypothetical protein PA0259 < As11 290529 290665 137 PA14_03190 < 281975
- Hypothetical protein PA0264 < As13 299094 299181 88 PA14_03420 < 313235
gshB Glutathione synthetase PA0407 < As19 448929 449284 356 PA14_05310 < 463561
cupA1 Fimbrial subunit CupA1 PA2128 > As102 2342397 2342560 164 PA14_37060 < 3300832
trxB1 Thioredoxin reductase 1 PA2616 > As119 2959629 2959767 139 PA14_30280 < 2622144
nuoA NADH dehydrogenase I chain A PA2637 > As120 2982707 2982848 142 PA14_30020 < 2599053
rmf Ribosome modulation factor PA3049 > As135 3414435 3414491 57 PA14_24650 < 2154716
fadD2 Long-chain-fatty-acid--CoA ligase PA3300 < As150 3697506 3697616 111 PA14_21340 > 1849717
fpvB Second ferric pyoverdine receptor FpvB PA4168 > As174 4666087 4666202 116 PA14_09970 < 856527
pilY1 Type 4 fimbrial biogenesis protein PilY1 PA4554 > As197 5101107 5101200 94 PA14_60310 > 5374009
As198 5101511 5101611 101
ponA Penicillin-binding protein 1A PA5045 > AsponA 5680819 5681167 349 PA14_66670 > 5952559
wzm Membrane subunit of A-band LPS efflux transporter PA5451 < As243 6141133 6141239 107 PA14_71960 < 6414559
ysxC Ribosome biogenesis GTP-binding protein YsxC PA5492 > As247 6183216 6183389 174 PA14_72480 > 6456518
  1. The 4 asRNAs detected in all 3 studies are shown in bold.