Table 3 AsRNAs detected in this study and in Wurtzel et al. (2012)[27]
From: Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa
AsRNA antisense to | This study | Wurtzel et al.(2012) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
P. aeruginosaPAO1 | P. aeruginosaPA14 | |||||||||
Gene name | Gene function | Gene | Gene | Name | Start | End | Length | Gene locus | Gene direction | TSS of asRNA |
locus | direction | asRNA | asRNA | asRNA | asRNA | |||||
dnaA | Chromosomal replication initiator protein DnaA | PA0001 | > | AsdnaA | 1320 | 1784 | 465 | PA14_00010 | > | 715 |
- | Hypothetical protein | PA0259 | < | As11 | 290529 | 290665 | 137 | PA14_03190 | < | 281975 |
- | Hypothetical protein | PA0264 | < | As13 | 299094 | 299181 | 88 | PA14_03420 | < | 313235 |
gshB | Glutathione synthetase | PA0407 | < | As19 | 448929 | 449284 | 356 | PA14_05310 | < | 463561 |
cupA1 | Fimbrial subunit CupA1 | PA2128 | > | As102 | 2342397 | 2342560 | 164 | PA14_37060 | < | 3300832 |
trxB1 | Thioredoxin reductase 1 | PA2616 | > | As119 | 2959629 | 2959767 | 139 | PA14_30280 | < | 2622144 |
nuoA | NADH dehydrogenase I chain A | PA2637 | > | As120 | 2982707 | 2982848 | 142 | PA14_30020 | < | 2599053 |
rmf | Ribosome modulation factor | PA3049 | > | As135 | 3414435 | 3414491 | 57 | PA14_24650 | < | 2154716 |
fadD2 | Long-chain-fatty-acid--CoA ligase | PA3300 | < | As150 | 3697506 | 3697616 | 111 | PA14_21340 | > | 1849717 |
fpvB | Second ferric pyoverdine receptor FpvB | PA4168 | > | As174 | 4666087 | 4666202 | 116 | PA14_09970 | < | 856527 |
pilY1 | Type 4 fimbrial biogenesis protein PilY1 | PA4554 | > | As197 | 5101107 | 5101200 | 94 | PA14_60310 | > | 5374009 |
As198 | 5101511 | 5101611 | 101 | |||||||
ponA | Penicillin-binding protein 1A | PA5045 | > | AsponA | 5680819 | 5681167 | 349 | PA14_66670 | > | 5952559 |
wzm | Membrane subunit of A-band LPS efflux transporter | PA5451 | < | As243 | 6141133 | 6141239 | 107 | PA14_71960 | < | 6414559 |
ysxC | Ribosome biogenesis GTP-binding protein YsxC | PA5492 | > | As247 | 6183216 | 6183389 | 174 | PA14_72480 | > | 6456518 |