Table 4 AsRNAs detected in Ferrara et al. (2012) [26] and in Wurtzel et al. (2012) in P. aeruginosa PA14[27]
From: Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa
AsRNA antisense to | Ferrara et al.(2012) | Wurtzel et al.(2012) | |||||
|---|---|---|---|---|---|---|---|
P. aeruginosaPA14 | P. aeruginosaPA14 | ||||||
Gene name | Gene function | Gene direction | Name | Start | End | Length | TSS of asRNA |
asRNA | asRNA | asRNA | asRNA | ||||
PA14_04820 | TetR family transcriptional regulator | > | SPA0112 | 425649 | 426248 | 600 | 426072 |
gshB | Glutathione synthetase | < | SPA0113 | 463700 | 464100 | 401 | 463561 |
PA14_22270 | Recombinase | < | SPA0018 | 1940100 | 1940300 | 201 | 1941053 |
PA14_28290 | Hypothetical protein | > | SPA0116 | 2446100 | 2446200 | 101 | 2446191 |
nuoA | NADH dehydrogenase subunit A | < | SPA0114 | 2599000 | 2599200 | 201 | 2599053 |
PA14_35720 | Hypothetical protein | < | SPA0019 | 3176100 | 3176300 | 201 | 3176580 |
PA14_46460 | Hypothetical protein | < | SPA0020 | 4134300 | 4134700 | 401 | 4134289 |
purC | Phosphoribosylaminoimidazole-succinocarboxamide synthase | < | SPA0168 | 4553300 | 4553400 | 101 | 4553302 |
PA14_51540 | Transposase | < | SPA0169 | 4583200 | 4583500 | 301 | 4583062 |
PA14_59370 | Hypothetical protein | < | SPA0021 | 5288100 | 5288500 | 401 | 5288463 |
PA14_59580 | Transposase | < | SPA0022 | 5303200 | 5303500 | 301 | 5302248 |
PA14_59840 | Hypothetical protein | > | SPA0023 | 5330700 | 5330900 | 201 | 5330858 |
ponA | Penicillin-binding protein 1A | > | SPA0119 | 5951200 | 5952700 | 1501 | 5952559 |
PA14_69050 | Hypothetical protein | > | SPA0173 | 6157800 | 6158100 | 301 | 6157722 |
ysxC | Ribosome biogenesis GTP-binding protein YsxC | > | SPA0122 | 6456400 | 6456600 | 201 | 6456518 |