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Table 3 Mapping metrics for assemblies

From: Single molecule sequencing and genome assembly of a clinical specimen of Loa loa,the causative agent of loiasis

Assembler Sequencing data FR reads RF reads Tandem Median insert Size ± Abs. Dev. Mean insert Size ± St. Dev.
CA Illumina MiSeq 7,163,609 690 739 470 ± 45 480 ± 72
MaSurCA Illumina MiSeq 7,315,963 340 137 469 ± 44 478 ± 71
CLCBio Illumina MiSeq 6,917,178 103 29 466 ± 44 475 ± 72
CA Illumina-corrected PacBio reads 7,292,995 694 298 470 ± 44 479 ± 71
CA Illumina- and 454-corrected PacBio reads 7,459,123 600 288 470 ± 44 480 ± 71
HGAP2 PacBio reads 7,544,255 696 826 471 ± 45 480 ± 71
HGAP2 with trimming PacBio reads 7,564,549 697 827 471 ± 45 480 ± 71
  1. This table provides the statistics about the mapping of all of the Illumina read pairs against all of the contigs generated by various combinations of assemblers and data sets as assessed by PICARD. The statistics reported include the number of FR reads, the number of RF reads, the number of tandem reads, the median insert ± on absolute deviation, and the mean insert size ± one absolute deviation.