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Table 4 20 most abundant annotated genes involved in “response to stress” from individual tissues

From: De novo transcriptome analysis of Perna viridis highlights tissue-specific patterns for environmental studies

BLAST top-hit description

FPKM*

Adductor muscle

Gills

Hepatopancreas

2'-5'-oligoadenylate synthetase 3

0.78

7.25

38.09

Activator of 90 kDa heat shock protein ATPase-like protein 1

16.40

28.60

26.20

B Chain B, Solution Structure Of S5a Uim-1 ubiquitin complex

1693.91

1439.25

1004.83

Catalase

10.49

18.55

57.91

Defensin-B

0.70

5.25

5169.03

Eosinophil peroxidase

0.28

57.76

1.04

Epididymal secretory glutathione peroxidase

0.01

1.76

339.67

Flap endonuclease 1-A

8.54

20.45

13.54

Glucose-regulated protein 94

136.47

119.02

0.19

Glutathione peroxidase 3

0.06

1.62

872.96

Growth arrest and DNA-damage-inducible protein GADD45 alpha

29.06

54.65

11.08

Growth arrest and DNA-damage-inducible protein GADD45 gamma

32.61

10.91

5.17

Heat shock factor binding protein 1

23.82

354.84

138.25

Heat shock protein 60

15.56

57.83

51.70

Heat shock protein 71

1664.60

1676.22

1521.06

Heat shock protein 90

375.18

712.16

633.78

Histone H3.3

143.32

781.19

437.40

Hypothetical protein CGI_10001640

25.81

89.80

117.91

Hypothetical protein CGI_10003818

0.22

0.10

35.65

Hypothetical protein CGI_10015993

11.76

1.71

5.98

Peroxidasin

0.22

41.80

0.27

Radical S-adenosyl methionine domain-containing protein 2

1.94

13.21

26.31

Ras-related C3 botulinum toxin substrate 1, partial

15.05

26.70

15.43

Retinal dehydrogenase

21.62

9.43

43.25

Selenium-dependent glutathione peroxidase

2.95

26.33

68.00

Small heat shock protein 22

1023.03

0.90

1.16

Small heat shock protein 24.1

277.20

443.02

518.55

Stress response protein nhaX

61.17

0.19

0.20

Unnamed protein product

5.23

100.72

13.63

UPS-like protein isoform 1

26.24

42.42

20.43

USP-like protein isoform 2

23.19

73.67

120.01

UV excision repair protein RAD23 homolog B-like

48.10

46.30

36.59

  1. Note: *Expression levels are presented as FPKM values. The top 20 genes for each tissue are in boldface type.