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Table 4 20 most abundant annotated genes involved in “response to stress” from individual tissues

From: De novo transcriptome analysis of Perna viridis highlights tissue-specific patterns for environmental studies

BLAST top-hit description FPKM*
Adductor muscle Gills Hepatopancreas
2'-5'-oligoadenylate synthetase 3 0.78 7.25 38.09
Activator of 90 kDa heat shock protein ATPase-like protein 1 16.40 28.60 26.20
B Chain B, Solution Structure Of S5a Uim-1 ubiquitin complex 1693.91 1439.25 1004.83
Catalase 10.49 18.55 57.91
Defensin-B 0.70 5.25 5169.03
Eosinophil peroxidase 0.28 57.76 1.04
Epididymal secretory glutathione peroxidase 0.01 1.76 339.67
Flap endonuclease 1-A 8.54 20.45 13.54
Glucose-regulated protein 94 136.47 119.02 0.19
Glutathione peroxidase 3 0.06 1.62 872.96
Growth arrest and DNA-damage-inducible protein GADD45 alpha 29.06 54.65 11.08
Growth arrest and DNA-damage-inducible protein GADD45 gamma 32.61 10.91 5.17
Heat shock factor binding protein 1 23.82 354.84 138.25
Heat shock protein 60 15.56 57.83 51.70
Heat shock protein 71 1664.60 1676.22 1521.06
Heat shock protein 90 375.18 712.16 633.78
Histone H3.3 143.32 781.19 437.40
Hypothetical protein CGI_10001640 25.81 89.80 117.91
Hypothetical protein CGI_10003818 0.22 0.10 35.65
Hypothetical protein CGI_10015993 11.76 1.71 5.98
Peroxidasin 0.22 41.80 0.27
Radical S-adenosyl methionine domain-containing protein 2 1.94 13.21 26.31
Ras-related C3 botulinum toxin substrate 1, partial 15.05 26.70 15.43
Retinal dehydrogenase 21.62 9.43 43.25
Selenium-dependent glutathione peroxidase 2.95 26.33 68.00
Small heat shock protein 22 1023.03 0.90 1.16
Small heat shock protein 24.1 277.20 443.02 518.55
Stress response protein nhaX 61.17 0.19 0.20
Unnamed protein product 5.23 100.72 13.63
UPS-like protein isoform 1 26.24 42.42 20.43
USP-like protein isoform 2 23.19 73.67 120.01
UV excision repair protein RAD23 homolog B-like 48.10 46.30 36.59
  1. Note: *Expression levels are presented as FPKM values. The top 20 genes for each tissue are in boldface type.