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Table 5 20 most abundant annotated genes involved in “xenobiotics biodegradation and metabolism” in individual tissues

From: De novo transcriptome analysis of Perna viridis highlights tissue-specific patterns for environmental studies

BLAST top-hit description

FPKM*

Adductor muscle

Gills

Hepatopancreas

3-ketoacyl-CoA thiolase, mitochondrial

2.68

18.29

44.68

Acetyl- acetyltransferase mitochondrial

16.01

21.24

10.54

Alcohol dehydrogenase class-3

53.46

30.34

81.41

Aldehyde mitochondrial

7.55

47.66

42.06

ATPase family AAA domain-containing protein 2B

11.38

39.79

56.63

Carbonyl reductase

16.1

68.81

59.44

Cytochrome p450

0.62

11.38

35.83

Cytochrome p450 2c8

1.01

40.79

28.08

Cytochrome p450 2 k1-like

1.65

27.14

12.77

Cytochrome p450 3a-like isoform 1

2.76

4.11

46.21

Cytochrome p450 4f22

14.48

5.51

35.58

Dihydropyrimidinase

21.62

17.10

2.35

Dimethylaniline monooxygenase

1.52

4.14

46.37

Fumarylacetoacetase

8.75

18.67

8.63

Glutathione s-transferase alpha

18.34

34.55

136.66

Glutathione s-transferase pi 1

16.12

15.73

44.15

Glutathione s-transferase sigma 2

0.58

176.58

2.80

Glutathione s-transferase zeta

20.35

21.10

12.28

Glutathione-s-transferase omega class

0.54

56.96

56.97

Hydroxyacyl-coenzyme a mitochondrial

16.01

20.28

56.62

Hypothetical protein BRAFLDRAFT_86061

19.69

65.68

70.07

Hypothetical protein CAPTEDRAFT_149199

8.35

68.49

32.48

Microsomal glutathione s-transferase 2

5.76

20.62

26.62

Microsomal glutathione s-transferase 3

16.04

44.71

26.77

Microsomal glutathione-s-transferase

2.66

38.78

32.88

Monoamine oxidase A

11.64

2.73

12.58

Predicted protein

9.98

99.6

21.26

Regucalcin

0.07

0.26

149.99

Sodium- and chloride-dependent GABA transporter ine

0.62

63.33

143.35

Sorbitol dehydrogenase

7.25

3.22

48.91

Thymidine phosphorylase

4.77

13.95

36.81

Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase

2.67

5.90

38.77

Trifunctional enzyme subunit beta, mitochondrial-like

26.54

68.98

95.02

Uridine-cytidine kinase-like 1

9.03

16.26

0.35

  1. Note: *Expression levels are presented as FPKM values. The top 20 genes for each tissue are in boldface.
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BMC Genomics

ISSN: 1471-2164

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