Table 5 DEGs potentially caused by DMGs
From: Dysregulation of genome-wide gene expression and DNA methylation in abnormal cloned piglets
GeneID | Normal cloned group RPKM | Abnormal cloned group RPKM | log2 ratio abnormal cloned group/normal cloned group) | P value | FDR | Position of regulated methylation | Symbol |
|---|---|---|---|---|---|---|---|
100154546 | 66.2 | 320.5 | 2.28 | 0 | 0 | CDS a | ABRA |
100525414 | 38.4 | 156.3 | 2.02 | 2.4E-12 | 2.8E-11 | Intron | SYNPO2 |
ENSSSCG00000016792 | 44.7 | 139.9 | 1.65 | 4.7E-13 | 6.3E-12 | Intron | - |
733596 | 14.4 | 39.0 | 1.44 | 0 | 0 | Intronb | PLAGL1 |
100515375 | 97.6 | 261.9 | 1.42 | 1.7E-12 | 2.1E-11 | Intron | LOC100515375 |
100153598 | 96.7 | 238.2 | 1.30 | 1E-12 | 1.3E-11 | Down2k | TMEM110 |
ENSSSCG00000001485 | 48.9 | 104.4 | 1.09 | 4.9E-13 | 6.5E-12 | CDS,Intron,Intron | - |
100155420 | 72.6 | 150.6 | 1.05 | 8.4E-13 | 1.1E-11 | Intron | NHP2L1 |
100520312 | 373.4 | 181.8 | -1.04 | 3.6E-39 | 9.2E-38 | up2k | LOC100520312 |
ENSSSCG00000006556 | 1128.1 | 184.5 | -2.61 | 0 | 0 | up2k Intron | TPM3 |