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Table 5 Significance levels of TF and TC Families in different maize tissues

From: Maize and millet transcription factors annotated using comparative genomic and transcriptomic data

Family Ear Embryonic Leaf Leaf at later stage Root Seed Shoot Tassel
AP2 0.67969 0.07021 0.56658 0.34981 0.03766 0.33074 0.59394
ARF 4.86E-05 3.88E-05 0.06251 0.00087 0.00118 0.003 0.00512
ARR-B 0.05005 0.02615 0 0.06493 0.06871 0.09044 0
AUX/IAA 0.01157 0.00349 0.01556 0.00023 0.00152 0.00134 0.0014
B3 0.07468 0.05294 0.974 0.88084 0.04704 0.09984 0.78141
BES1 0.43059 0.56894 0.72694 0.15304 0.04916 0.57422 0.44143
C2H2 0.40462 0.78835 0.93476 0.73105 0.48738 0.97906 0.97111
C3H 4.24E-06 5.48E-07 0.00079 9.57E-07 4.66E-08 3.25E-07 0.00022
CAMTA 0 0 0 0 0 0 0
CO-like 0.0025 0.24574 0 0.3737 0.03475 0 0
CPP 0.0112 0.00423 0 0.13826 0 0.0272 0
DBB 0 0.02279 0.05128 0 0.01288 0.30478 0.05652
Dof 0.03949 0.43131 0.17721 0.92732 0.01726 0.85531 0.33311
E2F/DP 0.17299 0.00468 0.2946 0.29741 0.44409 0.32046 0.12153
EIL 0.78314 0.02615 0.49092 0.7444 0.28728 0.34398 0.5084
ERF 1 0.98559 0.54626 0.79527 0.90577 0.99998 0.99987
FAR1 0.01502 0.00468 0.02056 0.00061 0.00338 0 0
G2-like 0.30988 0.77284 0.61504 0.47687 0.18978 0.04774 0.1884
GATA 0.01486 0.00012 0.22716 0.19129 0.00329 0.02585 0.05481
GRAS 0.48999 0.37522 0.92927 0.60385 0.60767 0.98753 0.70509
GRF 0 0 0.04081 0.34429 0 0 0
GeBP 0 0 0 0.00524 0 0 0
HB-other 0.11041 0.10066 0.12306 0.05348 0.17347 0.11616 0.13742
HD-ZIP 0.00013 0.20318 0.06448 0.03399 0.00064 0.03699 0.00026
HMG 0.00529 0.1858 0.04081 0.01778 0.06054 0.08808 0.04531
HMGI/HMGY 0 0.00423 0.06445 0.00081 0 0 0.0705
HSF 0.01116 4.94E-05 0.0551 0.02572 0.0236 0.22818 0.16553
LBD 0.99964 0.99862 0.99999 0.97509 0.92321 0.99993 0.99971
M-type 0.85675 0.9992 0.96814 0.92997 0.6328 0.92136 0.16782
MBD 0.22458 0.00423 0.06445 0.13826 0.10394 0.36196 0.27978
MIKC 0.00118 0.99996 0.99983 0.94689 0.01181 0.12968 0.00129
MYB 0.99839 1 0.99999 0.04121 0.84955 0.97306 0.97846
MYB_related 0.56902 0.77282 0.71872 0.00482 0.23988 0.13373 0.97806
NAC 0.99593 0.99509 0.93794 0.07169 0.49051 0.21413 0.41416
NF-YA 0.00364 0.00108 0 0.04416 0.0066 0.01104 0.03632
NF-YB 0.61894 0.80516 0.91116 0.20323 0.50517 0.78466 0.80344
NF-YC 0.34727 0.19528 0.02056 0.15186 0.44409 0.32046 0.02334
Nin-like 0.47377 0.14231 0.82469 0.12431 0.15546 0.42769 0.03632
OFP 0.32285 0.45214 0.86382 1 0.02237 0.83652 0.9731
SBP 0.00085 0.08131 0.03956 0.83484 0.00254 0.0064 0.00028
SRS 0.0112 0.30507 0.99933 0.96581 0 0.98247 0.56448
Sigma54_activat 0 0 0 0 0 0 0
TALE 0.00038 0.3918 0.65757 0.00274 0.00103 0.0024 0.01626
TCP 0.10247 0.06195 0.7239 0.99872 0.09356 0.42335 0.02011
Trihelix 2.10E-05 3.09E-09 0.00386 3.27E-06 5.58E-07 0.00161 0
WOX 0.94866 0.98276 0.99999 0.97133 0.44409 0.99912 0.76411
WRKY 0.99002 0.99987 0.68042 0.00066 0.99999 0.76124 0.97375
YABBY 0.0112 0.0335 0.7832 0.9925 0.10394 0.14156 0.27978
ZF-HD 0.00056 0.09192 0.06354 1 0 0.01969 0.21141
bHLH 0.76136 0.40417 0.64008 0.06933 0.61467 0.10359 0.50928
bZIP 0.0256 0.03162 0.01097 8.05E-08 2.45E-05 0.10417 0.12073
mTERF 0.00076 7.17E-06 0.00263 0.0492 0.00188 0.00041 0.02373
BED 0.86112 0.99946 0.99932 0.99858 0.99998 0.75519 0.80988
TAZ 0.10583 0 0 0 0 0.16493 0
  1. Significance levels are based on P-values reported by Fisher’s exact test, a lower significance level means that larger amount of genes in a family are expressed in a tissue group. A P-value lower than 0.05 is regarded as significant.