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Table 5 Significance levels of TF and TC Families in different maize tissues

From: Maize and millet transcription factors annotated using comparative genomic and transcriptomic data

Family

Ear

Embryonic Leaf

Leaf at later stage

Root

Seed

Shoot

Tassel

AP2

0.67969

0.07021

0.56658

0.34981

0.03766

0.33074

0.59394

ARF

4.86E-05

3.88E-05

0.06251

0.00087

0.00118

0.003

0.00512

ARR-B

0.05005

0.02615

0

0.06493

0.06871

0.09044

0

AUX/IAA

0.01157

0.00349

0.01556

0.00023

0.00152

0.00134

0.0014

B3

0.07468

0.05294

0.974

0.88084

0.04704

0.09984

0.78141

BES1

0.43059

0.56894

0.72694

0.15304

0.04916

0.57422

0.44143

C2H2

0.40462

0.78835

0.93476

0.73105

0.48738

0.97906

0.97111

C3H

4.24E-06

5.48E-07

0.00079

9.57E-07

4.66E-08

3.25E-07

0.00022

CAMTA

0

0

0

0

0

0

0

CO-like

0.0025

0.24574

0

0.3737

0.03475

0

0

CPP

0.0112

0.00423

0

0.13826

0

0.0272

0

DBB

0

0.02279

0.05128

0

0.01288

0.30478

0.05652

Dof

0.03949

0.43131

0.17721

0.92732

0.01726

0.85531

0.33311

E2F/DP

0.17299

0.00468

0.2946

0.29741

0.44409

0.32046

0.12153

EIL

0.78314

0.02615

0.49092

0.7444

0.28728

0.34398

0.5084

ERF

1

0.98559

0.54626

0.79527

0.90577

0.99998

0.99987

FAR1

0.01502

0.00468

0.02056

0.00061

0.00338

0

0

G2-like

0.30988

0.77284

0.61504

0.47687

0.18978

0.04774

0.1884

GATA

0.01486

0.00012

0.22716

0.19129

0.00329

0.02585

0.05481

GRAS

0.48999

0.37522

0.92927

0.60385

0.60767

0.98753

0.70509

GRF

0

0

0.04081

0.34429

0

0

0

GeBP

0

0

0

0.00524

0

0

0

HB-other

0.11041

0.10066

0.12306

0.05348

0.17347

0.11616

0.13742

HD-ZIP

0.00013

0.20318

0.06448

0.03399

0.00064

0.03699

0.00026

HMG

0.00529

0.1858

0.04081

0.01778

0.06054

0.08808

0.04531

HMGI/HMGY

0

0.00423

0.06445

0.00081

0

0

0.0705

HSF

0.01116

4.94E-05

0.0551

0.02572

0.0236

0.22818

0.16553

LBD

0.99964

0.99862

0.99999

0.97509

0.92321

0.99993

0.99971

M-type

0.85675

0.9992

0.96814

0.92997

0.6328

0.92136

0.16782

MBD

0.22458

0.00423

0.06445

0.13826

0.10394

0.36196

0.27978

MIKC

0.00118

0.99996

0.99983

0.94689

0.01181

0.12968

0.00129

MYB

0.99839

1

0.99999

0.04121

0.84955

0.97306

0.97846

MYB_related

0.56902

0.77282

0.71872

0.00482

0.23988

0.13373

0.97806

NAC

0.99593

0.99509

0.93794

0.07169

0.49051

0.21413

0.41416

NF-YA

0.00364

0.00108

0

0.04416

0.0066

0.01104

0.03632

NF-YB

0.61894

0.80516

0.91116

0.20323

0.50517

0.78466

0.80344

NF-YC

0.34727

0.19528

0.02056

0.15186

0.44409

0.32046

0.02334

Nin-like

0.47377

0.14231

0.82469

0.12431

0.15546

0.42769

0.03632

OFP

0.32285

0.45214

0.86382

1

0.02237

0.83652

0.9731

SBP

0.00085

0.08131

0.03956

0.83484

0.00254

0.0064

0.00028

SRS

0.0112

0.30507

0.99933

0.96581

0

0.98247

0.56448

Sigma54_activat

0

0

0

0

0

0

0

TALE

0.00038

0.3918

0.65757

0.00274

0.00103

0.0024

0.01626

TCP

0.10247

0.06195

0.7239

0.99872

0.09356

0.42335

0.02011

Trihelix

2.10E-05

3.09E-09

0.00386

3.27E-06

5.58E-07

0.00161

0

WOX

0.94866

0.98276

0.99999

0.97133

0.44409

0.99912

0.76411

WRKY

0.99002

0.99987

0.68042

0.00066

0.99999

0.76124

0.97375

YABBY

0.0112

0.0335

0.7832

0.9925

0.10394

0.14156

0.27978

ZF-HD

0.00056

0.09192

0.06354

1

0

0.01969

0.21141

bHLH

0.76136

0.40417

0.64008

0.06933

0.61467

0.10359

0.50928

bZIP

0.0256

0.03162

0.01097

8.05E-08

2.45E-05

0.10417

0.12073

mTERF

0.00076

7.17E-06

0.00263

0.0492

0.00188

0.00041

0.02373

BED

0.86112

0.99946

0.99932

0.99858

0.99998

0.75519

0.80988

TAZ

0.10583

0

0

0

0

0.16493

0

  1. Significance levels are based on P-values reported by Fisher’s exact test, a lower significance level means that larger amount of genes in a family are expressed in a tissue group. A P-value lower than 0.05 is regarded as significant.