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Table 8 Expression patterns of the genes related to wing disc early development

From: Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis

Gene RNA-seq ID L5D6-RPKM PP-RPKM P0-RPKM L5D6 vs PP PP vs P0
engrailed Bm_nscaf2964_172 57.41 27.17 25.47 -1.08* -
Hedgehog Bm_nscaf3048_40 13.70 5.56 3.24 - -
decapentaplegic Bm_nscaf2993_221 38.81 22.75 17.10 - -
apterous AE Bm_nscaf2210_128 117.49 57.39 27.28 -1.03* -
apterous AF Bm_nscaf2210_130 31.10 27.52 8.94 - -1.62*
apterous Bβ Bm_nscaf2210_132 95.88 83.98 16.08 - -2.38*
Fringe 1 Bm_nscaf2860_94 13.82 40.86 15.17 1.56* -1.43*
Bm_nscaf2860_96 45.94 74.37 28.61 + -1.37*
delta Bm_nscaf2986_021 12.75 6.39 3.16 - -
serrate Bm_nscaf1705_01 83.35 35.30 18.98 -1.24* -
Notch 1 Bm_nscaf2888_347 9.04 4.05 3.31 - -
Bm_nscaf2888_348 5.91 4.25 9.16 - +
Bm_nscaf2888_349 17.65 14.18 7.54 - -
Wingless(precursor) Bm_nscaf2847_167 17.20 5.51 0.86 -1.64* -
vestigial Bm_nscaf3056_42 17.08 7.54 7.70 - +
scalloped Bm_nscaf1898_116 52.42 25.22 14.10 -1.06* -
Scalloped isoform 2 Bm_nscaf1898_117 44.05 35.26 8.31 - -
achaete-scute 2 Bm_nscaf1898_167 2.04 7.54 40.06 + 2.41*
urbain Bm_nscaf2902_362 45.40 11497.96 161.44 7.98* -6.15*
  1. 1These genes have more than one RNA-Seq sequences. The gene expression level was calculated by RPKM method. "+" represents up-regulation, and "-" represents down-regulation. Asterisks indicate that the gene, whose expression level had more than two folds difference between two stages and False Discovery Rate (FDR) was less than 0.001, was identified as differentially expressed at this developmental stage. And the values in the last two columns were calculated by Log2(PP-RPKM/L5D6-RPKM) or Log2(P0-RPKM/PP-RPKM) and only those differentially expressed genes are given.