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Figure 3 | BMC Genomics

Figure 3

From: A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq

Figure 3

Genome coverage profiles for FMDV serotype panel. Sequence data coverage at each position along the genome is shown for serotype O (black), A (pink), Asia 1 (orange), C (green), SAT 1 (light blue), SAT 2 (blue), and SAT 3 (yellow). The majority of the coverage is above 1000x. In all viruses tested, a poly(C) tract within the FMDV genome at ~375 bp was associated in a reduction in coverage. The coverage depth observed for SAT 3 was lower than other serotypes. Primer locations are shown as black arrowheads above the genome illustration.

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BMC Genomics

ISSN: 1471-2164

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