Skip to main content

Table 1 Differentially expressed transcripts in high and low quality Atlantic halibut 8CS embryos

From: Profiling of the embryonic Atlantic halibut (Hippoglossus hippoglossus L.) transcriptome reveals maternal transcripts as potential markers of embryo quality

    

Microarray

qPCR

Function

Probe name

GeneBank Accession

BLAST hit gene description ( Abbreviation)

Fold-change (±SD)

Adj. p-value

Fold-change (±SD)

p-value

Immune response

HH_90607192

EB040633

interferon regulatory factor 7 (irf7)

↓8.0 ± 0.3

7E-06

↓8.9 ± 0.0

0.005

Uncharacterized

HH_90603123

EB036564

NA

↓7.8 ± 0.2

2E-06

↓8.3 ± 0.0

< 0.001

Uncharacterized

HH_90988292

EB103461

NA

↓6.4 ± 0.1

4E-05

↓6.8 ± 0.2

0.005

Uncharacterized

HH_90596347

EB029788

NA

↓5.8 ± 0.5

4E-04

↓6.4 ± 0.3

< 0.001

RNA transcription

HH_90604682

EB038123

eef1a2 binding protein (eef1a2bp)

↓3.8 ± 0.1

2E-04

↓4.7 ± 0.2

0.005

Metabolism

HH_90596960

EB030401

cytochrome p450 (cyp2n)

↓3.5 ± 0.1

1E-04

↓3.8 ± 0.5

0.004

Uncharacterized

HH_193889799

FK703165

NA

↓3.4 ± 0.6

2E-04

↓4.2 ± 0.4

0.037

Cytoskeleton

HH_90607090

EB040531

microtubule-associated protein homolog

↓2.7 ± 0.3

1E-04

↓2.4 ± 0.6

0.021

Uncharacterized

HH_166851124

FD698747

NA

↓2.7 ± 0.5

2E-04

↓2.5 ± 0.7

< 0.001

Uncharacterized

HH_90606468

EB039909

unnamed protein product [Tetraodon nigroviridis]

↓2.2 ± 0.4

3E-04

↓3.1 ± 0.2

0.001

Immune response

HH_38317730

EB173954

mhc class ii antigen alpha chain (mhc2a)

↑7.8 ± 0.7

3E-04

↑6.1 ± 0.1

< 0.001

Protein degradation

HH_90598492

EB031933

ring finger protein 213 (rnf213)

↑4.8 ± 0.5

8E-06

↑5.2 ± 0.3

< 0.001

Uncharacterized

HH_Contig436

EB036359

chromosome 3 open reading frame 17 protein

↑3.9 ± 0.3

3E-04

↑4.2 ± 0.0

0.002

Protein degradation

HH_Contig1979

EB036110

proteasome subunit beta type-9 precursor (psmb9)

↑3.7 ± 0.6

4E-04

↑3.8 ± 0.1

0.001

Uncharacterized

HH_90602035

EB035476

NA

↑3.3 ± 0.4

1E-04

↑3.0 ± 0.1

0.019

Uncharacterized

HH_90599790

EB033231

NA

↑3.2 ± 0.2

8E-05

↑3.7 ± 0.1

< 0.001

Immune response

HH_Contig2081

EB031478

programmed cell death 1 ligand 1 (pd-1 l)

↑3.0 ± 0.3

1E-04

↑2.8 ± 0.1

0.003

Cell signalling

HH_Contig1463

EB040282

membrane-spanning 4 subfamily a member 8a (ms4a8a)

↑2.9 ± 0.4

2E-05

↑2.5 ± 0.2

< 0.001

Uncharacterized

HH_Contig207

EB041560

NA

↑2.7 ± 0.1

6E-05

↑2.1 ± 0.3

< 0.001

Immune response

HH_Contig2306

EB036581

mhc class i alpha antigen (mhc1a)

↑2.5 ± 0.2

3E-04

↑3.4 ± 0.0

0.013

  1. For each transcript, fold-change difference (±SD) in low quality oocytes estimated by microarray (n = 3) and qPCR (n = 8) is given. Transcripts are grouped according to their function.