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Table 2 Correctly detected SVs for simulated data at 20% heterogeneity under varying levels of coverage

From: SHEAR: sample heterogeneity estimation and assembly by reference

  Deletions Tandem duplications
Depth SHEAR IMR/DENOM SHEAR IMR/DENOM
10 × 1 / 30 0 / 30 0 / 30 0 / 30
20 × 6 / 30 0 / 30 3 / 30 0 / 30
30 × 13 / 30 0 / 30 13 / 30 0 / 30
50 × 21 / 30 0 / 30 21 / 30 0 / 30
100 × 29 / 30 0 / 30 28 / 30 0 / 30
500 × 29 / 30 0 / 30 28 / 30 0 / 30
1000 × 29 / 30 0 / 30 28 / 30 0 / 30
  1. All simulations are done on a 70,000 bp portion of chromosome 15 after introducing deletions and tandem duplications of sizes 150 bp, 1000 bp, and 30,000 bp, each over 10 different iterations, for a total of 30 different deletion events, and 30 different tandem duplication events.