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Table 2 Correctly detected SVs for simulated data at 20% heterogeneity under varying levels of coverage

From: SHEAR: sample heterogeneity estimation and assembly by reference

 

Deletions

Tandem duplications

Depth

SHEAR

IMR/DENOM

SHEAR

IMR/DENOM

10 ×

1 / 30

0 / 30

0 / 30

0 / 30

20 ×

6 / 30

0 / 30

3 / 30

0 / 30

30 ×

13 / 30

0 / 30

13 / 30

0 / 30

50 ×

21 / 30

0 / 30

21 / 30

0 / 30

100 ×

29 / 30

0 / 30

28 / 30

0 / 30

500 ×

29 / 30

0 / 30

28 / 30

0 / 30

1000 ×

29 / 30

0 / 30

28 / 30

0 / 30

  1. All simulations are done on a 70,000 bp portion of chromosome 15 after introducing deletions and tandem duplications of sizes 150 bp, 1000 bp, and 30,000 bp, each over 10 different iterations, for a total of 30 different deletion events, and 30 different tandem duplication events.
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BMC Genomics

ISSN: 1471-2164

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