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Table 3 Plant Growth Promoting Genes of P. polymyxa strains

From: Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness

Trait

Gene Name

CR1

E681

M1

SC2

Indole-3-acetic acid production

    
 

ipdC

YP_008911027

YP_003869749

YP_005958986

YP_003945692

 

auxin efflux carriers

YP_008912813 YP_008912323 YP_008911849

YP_003871347 YP_003870860 YP_003870585

YP_005960839 YP_005960204 YP_005959850

YP_003947565 YP_003947053 YP_003946661

Phosphate solubilization

    
 

gcd

YP_008912273

YP_003870830

YP_005960174

YP_005960174

Phosphonate cluster (phn)

    
 

phnA

YP_008914717

YP_003873107

YP_008050528

YP_003949521

 

phnB

YP_008910326

YP_003869234

YP_003945144

YP_005958491

 

phnC

YP_008913947

YP_003872434

YP_008049904

YP_003948836

 

phnD

YP_008913946

YP_003872433

YP_008049903

YP_003948835

 

phnE

YP_008913948

YP_003872435

YP_008049905

YP_003948837

 

phnW

YP_008914692

YP_003873086

-

-

 

phnX

YP_008909947

YP_003868868

YP_005958118

YP_003944734

 

ppd

YP_008914693

YP_003873087

-

-

 

pepM

YP_008914694

YP_003873088

-

-

Phosphate transporter (pst)

    
 

pstS

YP_008911198

YP_003869955

YP_005959210

YP_003945962

 

pstA

YP_008911200

YP_003869957

YP_005959212

YP_003945964

 

pstB

YP_008911201

YP_003869958

YP_005959213

YP_003945965

 

pstC

YP_008911199

YP_003869956

YP_005959211

YP_003945963

 

phoP

YP_008911212

YP_003869969

YP_005959224

YP_003945977

 

phoR

YP_008911211

YP_003869968

YP_005959223

YP_003945976

Nitrogen fixation

     
 

nifB

YP_008910495

-

-

-

 

nifH

YP_008910496

-

-

-

 

nifD

YP_008910497

-

-

-

 

nifK

YP_008910498

-

-

-

 

nifE

YP_008910499

-

-

-

 

nifN

YP_008910500

-

-

-

 

nifX

YP_008910501

-

-

-

 

hesA

YP_008910502

-

-

-

 

nifV

YP_008910503

-

-

-

  1. "-" corresponds to no genes with homology to the gene listed on the left. Accession numbers listed refers to protein sequences in the NCBI Protein database. Genes were identified using annotations provided in Genebank followed by BLASTx searches of the genomes using previously characterized homologs. Auxin efflux carrier proteins were identified using Transporter Classification on the JGI IMG database.
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BMC Genomics

ISSN: 1471-2164

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