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Table 4 Common Bacillus phage proteins of predicted function with over 20 members

From: Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity

Pham #*

Domain/function

# Members

# Phages

Phages (cluster or phage name)

Dna Replication/metabolism

236

DNA Polymerase

52

33

K,L1,L2,L3,L4,L5,L6,L8,SP10,Bc431v3

247

Ribonucleotide reductase

47

41

I,J,K1,L,0305φ8-36,L6,L3,BCD7,SP10,BanSTsamsa,SPB2

261

Helicase

36

33

L,K,SP10

256

Exonuclease

34

33

L,K,SP10

257

Nuclease

33

32

K,L1,L2,L3,L4,L5,L6,L7BPS10C,SP10,W.PH.,

101

Dihydrofolate Reducatase

32

31

Hakuna,Nagalana,Megatron G,J2,L,BCD7,BanS-Tsamsa

98

Thymidylate Synthase

30

28

L,BCD7

99

dNTP MonoP Kinase

30

29

I,L

246

Ribonucleotide diP Reduct.

29

27

J1,K1,L4,L5,L6,L8,0305phi8-36

232

DNA Polymerase III

29

27

L

238

Histone

28

27

L

252

dU Nucleotidylhydrolase

28

27

L

258

Replicative DNA Helicase

28

27

L

229

RecA

28

27

L

254

DNA Primase

28

27

L

227

Sigma Factor

28

27

L

244

Glutaredoxin

25

24

L1,L2,L4,L5,L6,SPBc2,BPS10c,BPS13,

370

DNA Segregation ATPase

24

24

Megatron,Nagalana,W.Ph

740

Met S-methyltransferase

24

16

E,F1,Andromeda,Gemini,Glittering,Curly,Eoghan,Taylor, Riggi,Blastoid,Finn,BV1,PL1,E1,phIS3501,phBC6A51 L5,L8,Bastille,Doofenshmirtz,JPB9,W.Ph

Virion structure and assembly

278

Tail Assembly Chaperone

56

27

L

274

Tail Fiber

43

29

J2,L ,BanS-Tsamsa

5174

Phage Terminase

41

33

K,L,SP10

264

Adsorption Tail

36

33

L1,L2,L3,L5,L6,L8,Bc431v3

295

Portal Protein

35

33

K,L,SP10

291

MCP

35

33

K,L,SP10

276

Tail Lysin

35

33

K,L,SP10

266

Baseplate

34

33

K,L,SP10

283

Structural Protein

34

33

K,L,SP10

284

Tail Sheath

34

33

K,L,SP10

293

Prohead Protease

33

32

K,L2,L3,L4,L5,L6,L7,L8,phiNIT1,SP10

273

Tail Lysin

32

28

L,BanS-Tsamsa

277

Structural Protein

30

29

L,SP10

267

Baseplate

28

27

L

Cell lysis proteins

282

Murein Transglycosylase

34

33

K1,L,0305φ8-36,SP10,BanS-Tsamsa

226

Holin

28

27

L

198

Holin

28

27

L

Gene regulation/host functions

35

Bacterial SH3-like

29

28

D,F1,G,L5,L8,BanS-Tramsa,Doonfenshmirtz,ΦCM3

222

Metallophosphatase

28

27

L

260

cAMP Regulatory Protein

28

27

L

155

Beta Lactamase

26

25

L4,L5,L6,L7,L8,BanS-Tsamsa

787

Methyltransferase

20

19

L4,L5,L8

676

Sigma 70 Factor

20

19

L4,L5,L8

  1. Abbreviations include deoxynucleotide monophosphate kinase (dNTP MonoP Kinase), ribonucleotide diphosphate reducatase (Ribonucleotide diP Reduct.), deoxyuridine nucleotidylhydrolase (dU Nucleotidylhydrolase), Methionine A-methyltransferase (Met A-methyltransferase), and major capsid protein (MCP). Gene products are given and are organized by basic function (DNA Replication/Metabolism, Virion Structure and Assembly, Cell Lysis Proteins, or Gene Regulation/Host Functions).
  2. *Pham #’s are specific to this analysis and are larger than the total number of phams due to assignment by Phamerator [62].
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BMC Genomics

ISSN: 1471-2164

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