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Table 3 Assembly comparison to 454 transcriptome data

From: Finding the missing honey bee genes: lessons learned from a genome upgrade

Tissue Total assembled transcripts Amel_4.5 Amel_4.0
Number Percent Number Percent
Abdomen 14,614 13,980 95.6% 13,987 95.7%
Brain‚ÄČ+‚ÄČovary 27,412 26,341 96.0% 26,342 96.0%
Embryo 19,616 18,565 94.6% 18,565 94.6%
Larvae 18,050 9,061 50.1% 9,041 50.0%
Mixed antennae 14,891 13,868 93.1% 13,865 93.1%
Ovary 28,451 27,500 96.6% 26,929 94.6%
Testes 10,557 9,234 87.4% 9,060 85.8%
Total 133,591 118,549 88.7% 117,789 88.2%
  1. Note: BLAT alignments of the assembled transcripts to the genome assemblies using default parameters and counting matches of any length at 95% identity.