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Table 2 Empirical Type I error rates at nominal Type I error rate 0.05 for three tests at two levels of read-coverage for three genes

From: IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data

Gene Read coverage Test
IUTA_SKK IUTA_CQ Cuffdiff2
Dhx9 30 0.10 0.10 0.08
  90 0.10 0.10 0.09
Mr1 30 0.22 0.13 0.28
  90 0.25 0.13 0.28
Trim11 30 0.13 0.11 0.10
  90 0.12 0.11 0.11