Table 2 Empirical Type I error rates at nominal Type I error rate 0.05 for three tests at two levels of read-coverage for three genes
From: IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data
Gene | Read coverage | Test | ||
|---|---|---|---|---|
IUTA_SKK | IUTA_CQ | Cuffdiff2 | ||
Dhx9 | 30 | 0.10 | 0.10 | 0.08 |
| Â | 90 | 0.10 | 0.10 | 0.09 |
Mr1 | 30 | 0.22 | 0.13 | 0.28 |
| Â | 90 | 0.25 | 0.13 | 0.28 |
Trim11 | 30 | 0.13 | 0.11 | 0.10 |
| Â | 90 | 0.12 | 0.11 | 0.11 |