Table 2 List of the 96 selected SNPs

5812b*

I_14574103

C

T

0.18

Hadsten

Mariager

27027*

II_13068160

A

G

0.00

Hadsten

Mariager

1800*

II_19830429

G

T

0.12

Hadsten

Mariager

1139*

III_9900776

C

T

0.03

Hadsten

Mariager

2620*

IV_10499598

C

T

0.07

Hadsten

Mariager

11120*

V_10474117

C

T

0.14

Hadsten

Mariager

9990*

VI_10404859

C

T

0.06

Hadsten

Mariager

10561*

VI_2863536

A

G

0.01

Hadsten

Mariager

9202*

VII_22894561

A

G

-0.12

Hadsten

Mariager

35752*

VII_4229364

A

G

0.05

Hadsten

Mariager

7275*

VIII_11705544

C

T

0.00

Hadsten

Mariager

28703*

VIII_14145458

A

C

-0.05

Hadsten

Mariager

4390*

IX_10719826

A

G

-0.04

Hadsten

Mariager

16548*

XI_11232372

G

T

-0.01

Hadsten

Mariager

13177*

XII_10200557

C

T

-0.11

Hadsten

Mariager

14236*

XIV_10623162

A

G

0.04

Hadsten

Mariager

15044*

XIV_7617082

C

T

-0.07

Hadsten

Mariager

20574*

XV_10990137

A

G

-0.01

Hadsten

Mariager

20825*

XV_14641595

C

T

-0.01

Hadsten

Mariager

31954*

XVII_1792778

A

T

-0.03

Hadsten

Mariager

15728*

XIX_1761203

C

G

-0.01

Hadsten

Mariager

22319*

XX_12299466

A

G

0.18

Hadsten

Mariager

32977*

XX_15123750

A

C

-0.04

Hadsten

Mariager

21643*

XXI_10893532

C

G

0.05

Hadsten

Mariager

21858*

XXI_4924010

A

G

-0.10

Hadsten

Mariager

33523*

Scaffold_122_287328

G

T

0.09

Hadsten

Mariager

5812

I_14574107

C

T

0.50

Hald

Mariager

5939

I_16513837

C

T

0.57

Hadsten

Mariager

28321

I_21607623

C

T

0.27

Hald

Mariager

28526

I_4931967

A

C

0.89

Hadsten

Mariager

6844

I_4932075

A

T

0.85

Hadsten

Mariager

1955

II_22061028

G

T

0.81

Hadsten

Mariager

2113

II_3125972

A

C

0.80

Hadsten

Mariager

2114

II_3182440

A

G

0.72

Hadsten

Mariager

276

III_13446716

A

G

0.67

Hadsten

Mariager

3231

IV_20387384

T

C

0.71

Hadsten

Mariager

3644

IV_29334535

A

G

0.70

Hadsten

Mariager

27608

IV_29334612

A

T

0.78

Hadsten

Mariager

3851

IV_3216905

A

T

0.70

Hadsten

Mariager

4073

IV_5292424

A

C

0.40

Hadsten

Mariager

27768

IV_6660266

A

T

0.77

Hadsten

Mariager

27791

IV_8128962

G

T

0.70

Hadsten

Mariager

29903

V_8795372

A

G

0.65

Hadsten

Mariager

10131

VI_12603660

G

T

0.68

Hadsten

Mariager

8466

VII_11202861

A

G

0.61

Hadsten

Mariager

9026

VII_19985290

C

G

0.79

Hadsten

Mariager

9206

VII_22946194

A

G

0.91

Hadsten

Mariager

7745

VIII_17638021

C

T

0.82

Hadsten

Mariager

7807

VIII_18320215

A

G

0.67

Hadsten

Mariager

7808

VIII_18320304

A

G

0.76

Hadsten

Mariager

8351

VIII_9101385

A

G

0.52

Hadsten

Mariager

4521

IX_13007542

G

T

0.40

Hadsten

Mariager

5200

IX_5019009

C

T

0.78

Hadsten

Mariager

5238

IX_5337004

C

G

0.77

Hadsten

Mariager

23341

X_11668366

C

G

0.36

Hadsten

Mariager

33387

X_6967185

A

C

0.26

Hadsten

Mariager

16649

XI_12761116

C

T

0.69

Hadsten

Mariager

16691

XI_13340957

C

T

0.70

Hadsten

Mariager

31479

XI_9810247

C

T

0.50

Hadsten

Mariager

13340

XII_12843029

A

G

0.78

Hald

Mariager

13682

XII_18204005

C

T

0.68

Hadsten

Mariager

13744

XII_3061560

A

G

0.60

Hadsten

Mariager

30542

XII_8981405

C

T

0.39

Hadsten

Mariager

14188

XII_9924630

A

G

0.54

Hadsten

Mariager

11996

XIII_11719547

C

T

0.47

Hadsten

Mariager

19976

XVI_18491

C

T

0.47

Hadsten

Mariager

20063

XVI_3012006

C

T

0.24

Hadsten

Mariager

35236

XVI_5021761

C

T

0.54

Hadsten

Mariager

20222

XVI_565127

C

T

0.54

Hadsten

Mariager

20238

XVI_593641

C

T

0.89

Hadsten

Mariager

18651

XVII_11584572

C

T

0.68

Hadsten

Mariager

18814

XVII_13715805

A

G

0.70

Hadsten

Mariager

32060

XVII_7058248

C

T

0.49

Hald

Mariager

17506

XVIII_10340214

A

G

0.63

Hadsten

Mariager

17577

XVIII_11202384

G

T

0.49

Hadsten

Mariager

17787

XVIII_14143185

A

C

0.76

Hadsten

Mariager

18047

XVIII_3081169

A

T

0.26

Hadsten

Mariager

18262

XVIII_6321841

C

T

0.77

Hadsten

Mariager

15358

XIX_11929930

A

G

0.62

Hadsten

Mariager

30997

XIX_16674218

A

T

0.69

Hadsten

Mariager

30997b

XIX_16674221

C

G

0.68

Hadsten

Mariager

15971

XIX_3850285

G

T

0.48

Hadsten

Mariager

31101

XIX_5560633

C

T

0.72

Hadsten

Mariager

22229

XX_10890902

A

G

0.50

Hald

Mariager

32994

XX_15998772

C

T

0.53

Hadsten

Mariager

22693

XX_17936432

A

G

0.93

Hadsten

Mariager

23102

XX_7553459

A

C

0.56

Hadsten

Mariager

21688

XXI_11538922

C

T

0.65

Hadsten

Mariager

21693

XXI_11580802

A

G

0.69

Hadsten

Mariager

22037

XXI_8170313

A

T

0.71

Hadsten

Mariager

24457

Scaffold_122_232322

A

G

0.83

Hadsten

Mariager

25425

Scaffold_27_3893488

C

T

0.59

Hadsten

Mariager

33942

Scaffold_309_4735

A

G

0.51

Hadsten

Mariager

26062

Scaffold_58_401854

A

C

0.57

Hadsten

Mariager

26071

Scaffold_58_511232

C

T

0.45

Hadsten

Mariager

26405

Scaffold_76_220535

C

T

0.59

Hadsten

Mariager