Table 1 Overview of de novo sequence assembly for sand rice
Length range (bp) | Contigs | Transcripts | Unigenes |
|---|---|---|---|
200-300 | 1,351,306 (96.03%) | 21,597 (20.74%) | 19,711 (29.10%) |
300-500 | 24,424 (1.74%) | 23,915 (22.97%) | 20,837 (30.76%) |
500-1000 | 15,609 (1.11%) | 19,725 (18.94%) | 12,693 (18.74%) |
1000-2000 | 10,162 (0.72%) | 21,023 (20.19%) | 8,679 (12.81%) |
>2000 | 5,688 (0.40%) | 17,858 (17.15%) | 5,821 (8.59%) |
Total number | 1,407,189 | 104,118 | 67,741 |
Total length | 126,635,518 | 115,271,030 | 51,729,464 |
N50 length | 136 | 1,950 | 1,343 |
Mean length | 89.99 | 1107.12 | 763.63 |