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Table 1 Comparison of SNP-calls at 206 polymorphic positions in 206 MTBC genome sequence fastq files

From: KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes

  SNP in BWA mapping pipeline  
  Yes No Total
  N % N % N %
SNP in KvarQ 782 99.24 33 0.08 815 1.92
no SNP in KvarQ 6 0.76 41615 99.92 41621 98.08
Total 788 100 41648 100 42436 100