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Table 1 Comparison of SNP-calls at 206 polymorphic positions in 206 MTBC genome sequence fastq files

From: KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes

 

SNP in BWA mapping pipeline

 
 

Yes

No

Total

 

N

%

N

%

N

%

SNP in KvarQ

782

99.24

33

0.08

815

1.92

no SNP in KvarQ

6

0.76

41615

99.92

41621

98.08

Total

788

100

41648

100

42436

100