From: KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes
SNP in BWA mapping pipeline | ||||||
---|---|---|---|---|---|---|
Yes | No | Total | ||||
N | % | N | % | N | % | |
SNP in KvarQ | 782 | 99.24 | 33 | 0.08 | 815 | 1.92 |
no SNP in KvarQ | 6 | 0.76 | 41615 | 99.92 | 41621 | 98.08 |
Total | 788 | 100 | 41648 | 100 | 42436 | 100 |