Table 1 Information about the different E. coli strains used in the study
From: An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli
Name | Pathogroup | Phylogroup |
|---|---|---|
Escherichia coli O7:K1 CE10 | ExPEC (neonatal meningitis) | D |
Escherichia coli IAI39 | ExPEC (Uropathogenic E. coli (UPEC)) | D |
Escherichia coli SMS 3-5 | Multi-resistant | D |
Escherichia coli UMN026 | ExPEC (UPEC) | D |
Escherichia coli 536 | ExPEC (UPEC) | B2 |
Escherichia coli ED1A | Non-pathogenic | B2 |
Escherichia coli O83:H1 NRG 857C | AIEC (adherent-invasive E. coli) | B2 |
Escherichia coli LF82 | AIEC | B2 |
Escherichia coli clone D i2 | ExPEC (UPEC) | B2 |
Escherichia coli clone D i14 | ExPEC (UPEC) | B2 |
Escherichia coli CFT073 | ExPEC (UPEC) | B2 |
Escherichia coli ABU 83972 | ExPEC (UPEC) | B2 |
Escherichia coli UTI89 | ExPEC (UPEC) | B2 |
Escherichia coli UM146 | AIEC | B2 |
Escherichia coli IHE3034 | ExPEC (neonatal meningitis) | B2 |
Escherichia coli APEC O1 | Avian pathogenic E. coli (APEC) | B2 |
Escherichia coli S88 | ExPEC (neonatal meningitis) | B2 |
Escherichia coli SE15 | Non-pathogenic | B2 |
Escherichia coli NA114 | ExPEC (multidrug-resistant UPEC) | B2 |
Escherichia coli E2348_69 O127:H6 | Enteropathogenic E. coli (EPEC) | B2 |
Escherichia coli O157:H7 TW14359 | Shiga toxin-producing E. coli (STEC/EHEC) | E |
Escherichia coli O157:H7 EC4115 | STEC/EHEC | E |
Escherichia coli O157:H7 Sakai | STEC/EHEC | E |
Escherichia coli Xuzhou21 | STEC/EHEC | E |
Escherichia coli O55:H7 RM12579 | Atypical EPEC (aEPEC) | E |
Escherichia coli O55:H7 CB9615 | aEPEC | E |
Escherichia coli UMNK88 | Enterotoxigenic E. coli (ETEC) | A |
Escherichia coli P12b | Non-pathogenic | A |
Escherichia coli HS | Non-pathogenic | A |
Escherichia coli BL21 DE3 | Lab strain – Non-pathogenic | A |
Escherichia coli B REL606 | Lab strain – Non-pathogenic | A |
Escherichia coli BL21 Gold DE3 pLysS AG | Lab strain – Non-pathogenic | A |
Escherichia coli BW2952 | Lab strain – Non-pathogenic | A |
Escherichia coli K12 substr DH10B | Lab strain – Non-pathogenic | A |
Escherichia coli K12 substr MDS42 | Lab strain – Non-pathogenic | A |
Escherichia coli K12 substr W3110 | Lab strain – Non-pathogenic | A |
Escherichia coli DH1 (AP012030.1) | Lab strain – Non-pathogenic | A |
Escherichia coli DH1 (CP001637.1) | Lab strain – Non-pathogenic | A |
Escherichia coli O104:H4 str. 2009EL-2050 | Enteroaggregative – EHEC (EAggEC-EHEC) | B1 |
Escherichia coli O104:H4 str. 2009EL-2071 | EAggEC-EHEC | B1 |
Escherichia coli O104:H4 str. 2011C-3493 | EAggEC-EHEC | B1 |
Escherichia coli 55989 | EAggEC | B1 |
Escherichia coli W (CP002185.1) | Lab strain | B1 |
Escherichia coli W (CP002967.1) | Lab strain | B1 |
Escherichia coli KO11FL_162099 (CP002516.1) | Lab strain | B1 |
Escherichia coli KO11FL_162099 (CP002970.1) | Lab strain | B1 |
Escherichia coli SE11 | Non pathogenic | B1 |
Escherichia coli IAI1 | Non pathogenic | B1 |
Escherichia coli E24377A | ETEC | B1 |
Escherichia coli O103:H2 str. 12009 | STEC/EHEC | B1 |
Escherichia coli O111:H- str. 11128 | STEC/EHEC | B1 |
Escherichia coli O26:H11 str. 11368 | STEC/EHEC | B1 |
Escherichia coli APEC O78 | APEC | B1 |