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Table 5 Time measurement of GEMINI and VAS

From: VAS: a convenient web portal for efficient integration of genomic features with millions of genetic variants

Tool   Data loading/uploading (s)* Data integration (s) Total (s)   
GEMINI (as reported in[18]) Average 5,050.0 24.0 5,064.0
GEMINI (our testing results) Trial 1 9,944.6 154.1 10,098.6
  Trial 2 9,960.5 155.5 10,116.1
  Trial 3 10,182.4 156.9 10,339.3
  Trial 4 10,182.3 162.8 10,345.1
  Trial 5 10,053.2 169.1 10,222.2
  Average 10,064.6 159.7 10,224.3
  Std. dev. 115.2 6.2 117.6
VAS Trial 1 9.9 1,711.1 1,721.1
  Trial 2 10.4 1,772.3 1,782.7
  Trial 3 9.7 1,552.5 1,562.1
  Trial 4 9.2 1,541.6 1,550.8
  Trial 5 9.6 1,580.9 1,590.5
  Average 9.8 1,631.7 1,641.4
  Std. dev. 0.4 103.7 104.1
  1. *Time for GEMINI to load the data into database and perform pre-computations, and time for VAS to upload the file from the client browser to our server.