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Table 5 Time measurement of GEMINI and VAS

From: VAS: a convenient web portal for efficient integration of genomic features with millions of genetic variants

Tool

 

Data loading/uploading (s)*

Data integration (s)

Total (s)   

GEMINI (as reported in[18])

Average

5,050.0

24.0

5,064.0

GEMINI (our testing results)

Trial 1

9,944.6

154.1

10,098.6

 

Trial 2

9,960.5

155.5

10,116.1

 

Trial 3

10,182.4

156.9

10,339.3

 

Trial 4

10,182.3

162.8

10,345.1

 

Trial 5

10,053.2

169.1

10,222.2

 

Average

10,064.6

159.7

10,224.3

 

Std. dev.

115.2

6.2

117.6

VAS

Trial 1

9.9

1,711.1

1,721.1

 

Trial 2

10.4

1,772.3

1,782.7

 

Trial 3

9.7

1,552.5

1,562.1

 

Trial 4

9.2

1,541.6

1,550.8

 

Trial 5

9.6

1,580.9

1,590.5

 

Average

9.8

1,631.7

1,641.4

 

Std. dev.

0.4

103.7

104.1

  1. *Time for GEMINI to load the data into database and perform pre-computations, and time for VAS to upload the file from the client browser to our server.