Figure 2

Genome alignment and synteny analyses between L. maculans ‘brassicae’ (Lmb) and L. maculans ‘lepidii’ (Lml ). ( A) Whole genome dotplot showing intrachromosomal inversions occurring in the genome of L. maculans ‘brassicae’ (horizontal axis) compared to that of L. maculans ‘lepidii’ (vertical axis). Inverted regions are circled in black and the number of inversions is mentioned close to the circle. (B) Schematic zoomed representation of one SuperContig_2 region (in Lmb) and its syntenic region in Lml. The region contains three inversions and the location of bordering transposable elements in Lmb are indicated as black boxes. The arrows represent genes and their orientation. Genes with no orthologs are colored in grey.