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Table 3 Transposable element content in genomes of isolates of the Leptosphaeria maculans-Leptosphaeria biglobosa species complex

From: Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

   L. maculans‘brassicae’ L. maculans‘lepidii’ L. biglobosa‘brassicae’ L. biglobosa‘canadensis’ L. biglobosa‘thlaspii’
TE class TE order Bases covered % of repetitive fraction Bases covered % of repetitive fraction Bases covered % of repetitive fraction Bases covered % of repetitive fraction Bases covered % of repetitive fraction
Class I Ty1-Copia LTR 3372500 22.1 77794 7.6 166805 14.9 34236 3.8 141432 10.0
  Ty3-Gypsy LTR 8749750 57.4 426573 41.7 368819 32.9 399244 44.4 365617 25.7
  LINE 6996 0.0 6523 0.6 15680 1.4 4535 0.5 54520 3.8
  Misc. 586134 3.8 1552 0.2 0 0.0 0 0.0 0 0.0
  Sub-total: 12715380 83.3 512442 50.1 551304 49.2 438015 48.7 561569 39.5
Class II Tc1-Mariner 36075 0.2 193492 18.9 157676 14.1 76864 8.5 136579 9.6
  hAT 79154 0.5 1845 0.2 71796 6.4 21781 2.4 16950 1.2
  Mutator 890076 5.8 22524 2.2 42470 3.8 1344 0.1 3957 0.3
  MITE 0 0.0 11065 1.1 462 0.0 0 0.0 0 0.0
  Misc. 336819 2.2 19579 1.9 81576 7.3 30251 3.4 8034 0.6
  Sub-total: 1342124 8.8 248505 24.3 353980 31.6 130240 14.5 165520 11.6
Non-categorized Non-categorized 1199008 7.9 262241 25.6 215260 19.2 331133 36.8 694332 48.8
  Total: 15256512   1023188   1120544   899388   1421421