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Table 2 Significant KEGG pathway of stimulus-specific responses on Pst or Bgt

From: Large-scale transcriptome comparison reveals distinct gene activations in wheat responding to stripe rust and powdery mildew

KEGG pathway Correct-p value No of dysregulated enzymes
P P only PS S only S
ko00360 Phenylalanine metabolism 0.00055* 0.00691* 1 1(3.06) 1 10
ko00940 Phenylpropanoid biosynthesis 0.00559* 0.02167* 1 1 1 30
ko00592 alpha-Linolenic acid metabolism 0.01487* 0.00516* 1 1 1 13
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis 0.01643* 1 0.01345* 1 0.10249 7
ko00196 Photosynthesis - antenna proteins 0.00570* 1 1.89E-05* 1 0.00138* 12
ko00941 Flavonoid biosynthesis 0.03179* 0.10650 1 1 1 25
Ko00400 Phenylalanine, tyrosine and tryptophan biosynthesis 0.06556 0.03537* 1 1 1 19
Ko00710 Carbon fixation in photosynthetic organisms 1 1 6.24E-05* 1 0.00296* 22
Ko00906 Carotenoid biosynthesis 1 1 1 0.72054 0.03038* 20
ko00910 Nitrogen metabolism 0.16142 1 1 - 1 14
ko00904 Diterpenoid biosynthesis 0.25882 0.12611 1 - 1 17
ko00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 0.27716 0.0556 1 - 1(2.5) 7
Ko03010 Ribosome 1 1 1(4.43) 0.92345 1 70
ko00280 Valine, leucine and isoleucine degradation 1 1 0.761726 1 1 27
ko00195 Photosynthesis 1 1 0.465078 - 1 24
ko00402 Benzoxazinoid biosynthesis 1 1 1 - 1 2
  1. Note: All KEGG pathways were retrieved from MAS3.0 molecule annotation system. Some plant-specific pathways were computed repeat by extracting genes from comparing Pst with Bgt stress. The values of Correct-p were given and those less than 0.05 were marked with asterisks. Some enriched KEGG pathways with the high enrichment factor were noted and the factor was given in brackets. The indistinctive pathway that was listed (bottom 7 lines) had p-value <0.05 for analysis DEGs from Pst vs Bgt.
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BMC Genomics

ISSN: 1471-2164

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