Skip to main content

Table 1 Summary of read mapping

From: RNA-Seq derived identification of differential transcription in the chrysanthemum leaf following inoculation with Alternaria tenuissima

Sample ID

Total reads

Total basepairs

Total mapped reads

Perfect match

<=2 bp mismatch

Unique match

Multi-position match

Total unmapped reads

A

7524234

368687466

5429990

3412870

2017120

3522413

1907577

2094244

(100.00%)

(100.00%)

(72.17%)

(45.36%)

(26.81%)

(46.81%)

(25.35%)

(27.83%)

B

7248778

355190122

5069400

3184769

1884631

3321526

1747874

2179378

(100.00%)

(100.00%)

(69.93%)

(43.94%)

(26.00%)

(45.82%)

(24.11%)

(30.07%)

C

7201318

352864582

5033405

3149786

1883619

3322965

1710440

2167913

(100.00%)

(100.00%)

(69.90%)

(43.74%)

(26.16%)

(46.14%)

(23.75%)

(30.10%)

D

7554640

370177360

5060651

3142621

1918030

3366700

1693951

2493989

 

(100.00%)

(100.00%)

(66.99%)

(41.60%)

(25.39%)

(44.56%)

(22.42%)

(33.01%)