Table 1 Summary of the sequencing experiments for SNP discovery
From: Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)
RR-Seq | RAD-Seq | RNA-Seq | |
|---|---|---|---|
Samples (number) | Farmed (40), Wild (16), Haploid (1) | Farmed (160) | Farmed (72) |
Sequencing | Illumina 100 bp PE | Illumina 100 bp S&PE | Illumina 100 bp PE |
Initial putative SNPs | 472,072 | 467,268 | 816,570 |
SNPs for array design | 99,097 | 83,151 | 229,754 |
Final SNPs on array | 73,800 | 54,197 | 156,979 |