Application of in silico bulked segregant analysis for rapid development of markers linked to Bean common mosaic virusresistance in common bean

Table 1 Summary of tightly linked SNP markers to the I gene associated to BCMV resistance

BARCBEAN6K_3 SNP ID^a	SNP (NCBI ss#)^b	Susceptible SNP allele	Resistant SNP allele	Physical position	Distance from proximal and distal NBS-LRR R-genes Ilocus^c
sc01349ln84482_14096_G_A_345640749	ss715641188	G	A	48,289,722	106,554/24,845
sc00445ln245016_77514_C_T_217829459	ss715648456	C	T	48,447,134	263,966/182,257
sc00445ln245016_132522_T_G_217884467	ss715639906	T	G	48,512,722	329,554/247,845
sc00445ln245016_228076_A_G_217980021	ss715648451	A	G	48,606,577	423,409/341,700
sc00445ln245016_240603_A_G_217992548	ss715648452	A	G	48,617,402	434,234/352,525
sc00445ln245016_243467_G_A_217995412	ss715639908	G	A	48,620,266	437,098/355,389

^aOriginal SNP name in the BARCBEAN6K_3 SNP BeadChip.
^bNCBI Assay ID (ss#) at dbSNP Short Genetics Variation database (http://www.ncbi.nlm.nih.gov/projects/SNP/) containing the target SNP and flanking sequence information.
^cThe region contains seven putative disease-resistance loci belonging to the NBS-LRR gene family (Phvul.002G323000 to Phvul.002G323500, and Phvul.002G323800) which spans a ~81.7 kb region (48,183,168- 48,264,877) in chromosome Pv02.

ISSN: 1471-2164