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Table 2 PFam analysis of “novel” candidate effectors

From: Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida

Gene

Pfam domain

Accession

CDS length

Domain length

E-value

GPLIN_000948600

EF_hand_3

PF13202.1

137

25

9.30E-15

GPLIN_000948600

EF_hand_3

PF13202.1

137

25

9.30E-15

GPLIN_000948600

EF_hand_4

PF13405.1

137

31

8.30E-10

GPLIN_000948600

EF_hand_4

PF13405.1

137

31

8.30E-10

GPLIN_000948600

EF_hand_6

PF13833.1

137

54

1.60E-10

GPLIN_000948600

EF_hand_6

PF13833.1

137

54

1.60E-10

GPLIN_000776900

Gal-bind_lectin

PF00337.17

926

133

2.50E-13

GPLIN_000208700

Homeobox

PF00046.24

164

57

2.30E-08

GPLIN_000510600

Pkinase

PF00069.20

320

260

4.20E-57

GPLIN_001391000

Pkinase

PF00069.20

374

260

1.70E-08

GPLIN_000510600

Pkinase_Tyr

PF07714.12

320

259

7.20E-32

GPLIN_001318000

UQ_con

PF00179.21

182

140

2.70E-42

GPLIN_001268500

UQ_con

PF00179.21

305

140

1.50E-30

GPLIN_000075700

VWA

PF00092.23

195

179

4.70E-09

GPLIN_000075700

VWA_2

PF13519.1

195

172

1.50E-10

GPLIN_000713500

zf-C2H2

PF00096.21

161

23

4.30E-13

GPLIN_000713500

zf-C2H2

PF00096.21

161

23

4.30E-13

GPLIN_000713500

zf-C2H2

PF00096.21

161

23

4.30E-13

GPLIN_000713500

zf-C2H2_4

PF13894.1

161

24

2.90E-10

GPLIN_000713500

zf-C2H2_4

PF13894.1

161

24

2.90E-10

GPLIN_000713500

zf-C2H2_4

PF13894.1

161

24

2.90E-10

GPLIN_000589200

zf-C3HC4_3

PF13920.1

544

50

2.30E-13

GPLIN_000713500

zf-H2C2_2

PF13465.1

161

26

2.50E-16

GPLIN_000713500

zf-H2C2_2

PF13465.1

161

26

2.50E-16

GPLIN_000713500

zf-H2C2_2

PF13465.1

161

26

2.50E-16

GPLIN_000271900

zf-rbx1

PF12678.2

297

75

8.00E-10

GPLIN_000271900

zf-RING_2

PF13639.1

297

46

2.50E-11

  1. The identified Pfam domains are: EF_hand: a helix-loop-helix domain that is thought to be involved in calcium binding; Gal-bind_lectin: lectin domain thought to be involved in binding β-galactoside; Homeobox: homeobox transcription factors; Pkinase: protein kinase domains; UQ_con: ubiquitin E2 conjugating domains; VWA: von Willebrand factor domain; zf: zinc finger domain; zf-rbx1: zinc finger domain; zf-RING_2: domain contains a zinc finger and a domain associated with E3 ligase activity. Duplicate entries indicate that the domain is present more than once in the identified protein.