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Table 2 PFam analysis of “novel” candidate effectors

From: Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida

Gene Pfam domain Accession CDS length Domain length E-value
GPLIN_000948600 EF_hand_3 PF13202.1 137 25 9.30E-15
GPLIN_000948600 EF_hand_3 PF13202.1 137 25 9.30E-15
GPLIN_000948600 EF_hand_4 PF13405.1 137 31 8.30E-10
GPLIN_000948600 EF_hand_4 PF13405.1 137 31 8.30E-10
GPLIN_000948600 EF_hand_6 PF13833.1 137 54 1.60E-10
GPLIN_000948600 EF_hand_6 PF13833.1 137 54 1.60E-10
GPLIN_000776900 Gal-bind_lectin PF00337.17 926 133 2.50E-13
GPLIN_000208700 Homeobox PF00046.24 164 57 2.30E-08
GPLIN_000510600 Pkinase PF00069.20 320 260 4.20E-57
GPLIN_001391000 Pkinase PF00069.20 374 260 1.70E-08
GPLIN_000510600 Pkinase_Tyr PF07714.12 320 259 7.20E-32
GPLIN_001318000 UQ_con PF00179.21 182 140 2.70E-42
GPLIN_001268500 UQ_con PF00179.21 305 140 1.50E-30
GPLIN_000075700 VWA PF00092.23 195 179 4.70E-09
GPLIN_000075700 VWA_2 PF13519.1 195 172 1.50E-10
GPLIN_000713500 zf-C2H2 PF00096.21 161 23 4.30E-13
GPLIN_000713500 zf-C2H2 PF00096.21 161 23 4.30E-13
GPLIN_000713500 zf-C2H2 PF00096.21 161 23 4.30E-13
GPLIN_000713500 zf-C2H2_4 PF13894.1 161 24 2.90E-10
GPLIN_000713500 zf-C2H2_4 PF13894.1 161 24 2.90E-10
GPLIN_000713500 zf-C2H2_4 PF13894.1 161 24 2.90E-10
GPLIN_000589200 zf-C3HC4_3 PF13920.1 544 50 2.30E-13
GPLIN_000713500 zf-H2C2_2 PF13465.1 161 26 2.50E-16
GPLIN_000713500 zf-H2C2_2 PF13465.1 161 26 2.50E-16
GPLIN_000713500 zf-H2C2_2 PF13465.1 161 26 2.50E-16
GPLIN_000271900 zf-rbx1 PF12678.2 297 75 8.00E-10
GPLIN_000271900 zf-RING_2 PF13639.1 297 46 2.50E-11
  1. The identified Pfam domains are: EF_hand: a helix-loop-helix domain that is thought to be involved in calcium binding; Gal-bind_lectin: lectin domain thought to be involved in binding β-galactoside; Homeobox: homeobox transcription factors; Pkinase: protein kinase domains; UQ_con: ubiquitin E2 conjugating domains; VWA: von Willebrand factor domain; zf: zinc finger domain; zf-rbx1: zinc finger domain; zf-RING_2: domain contains a zinc finger and a domain associated with E3 ligase activity. Duplicate entries indicate that the domain is present more than once in the identified protein.