Figure 3
From: SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences
Annotated motifs performance comparison. Using 351 ChIP-seq datasets from ENCODE [19], we compared CMF [12], DECOD [13], DREME [11], XXmotif [14] and SeAMotE performances; A) E-values and B) q-values associated with the 5 top-ranked motifs for CMF, DECOD, DREME, SeAMotE and XXmotif. C) Proportion of transcription factors for which annotated motifs were succesfully identified is plotted against the number of top-ranked motifs employed for the TOMTOM search [31].