Table 2 Comparison of DREME [11] and SeAMotE
From: SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences
| Â | SeAMotE | Â | DREME | Â | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Protein | TPR | SPC | PPV | FDR | ACC | TPR | SPC | PPV | FDR | ACC |
ELAVL1 (Hafner) | 85.3 | 77.7 | 79.3 | 20.7 | 81.5 | 83.0 | 73.2 | 75.6 | 24.4 | 78.1 |
ELAVL1 (Lebedeva) | 80.3 | 74.9 | 76.2 | 23.8 | 77.6 | 75.6 | 74.5 | 73.3 | 26.7 | 75.0 |
ELAVL1 (Mnase) | 86.6 | 77.8 | 77.9 | 22.1 | 82.2 | 86.3 | 71.6 | 75.2 | 24.8 | 79.0 |
ELAVL1 (Mukharjee) | 92.2 | 82.8 | 84.3 | 15.7 | 87.5 | 89.5 | 81.7 | 83.1 | 16.9 | 85.6 |
FUS | 93.2 | 68.3 | 74.6 | 25.4 | 80.8 | 92.2 | 45.3 | 62.8 | 37.2 | 68.8 |
IGF2BP1-3 | 92.5 | 27.5 | 56.0 | 44.0 | 60.0 | 92.5 | 27.5 | 56.0 | 44.0 | 60.0 |
PUM2 | 91.8 | 87.5 | 88.0 | 12.0 | 89.6 | 84.9 | 92.4 | 91.8 | 8.2 | 88.7 |
QKI | 91.8 | 87.5 | 88.0 | 12.0 | 89.6 | 88.4 | 84.9 | 85.4 | 14.6 | 86.6 |
SFSR1 | 86.5 | 79.6 | 80.7 | 19.3 | 83.0 | 86.5 | 79.6 | 80.7 | 19.3 | 83.0 |
TAF15 | 95.4 | 68.4 | 75.1 | 24.9 | 81.9 | 91.0 | 54.9 | 66.9 | 33.1 | 73.0 |
TARDBP (iCLIP) | 88.9 | 89.4 | 89.3 | 10.7 | 89.1 | 87.9 | 93.8 | 93.5 | 6.5 | 90.9 |
TIA1 (iCLIP) | 86.7 | 62.3 | 70.4 | 29.6 | 74.5 | 86.7 | 62.3 | 70.4 | 29.6 | 74.5 |
TIAL1 (iCLIP) | 85.5 | 66.4 | 72.0 | 28.0 | 75.9 | 84.4 | 66.2 | 71.7 | 28.3 | 75.3 |
TOTAL | 88.6 | 73.3 | 78.0 | 22.0 | 80.9 | 86.8 | 69.8 | 75.9 | 24.1 | 78.3 |