Table 2 Non-synonymous changes in putative Cry toxin receptors, with their frequency and coverage in the susceptible and resistant phenotypes
Bora | LiTOX_N | LiTOX_S | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Receptor | Gene ID | Reference | Variant | % | Coverage | % | Coverage | % | Coverage | Position cDNA | Amino acid position | Amino acid change | Toxin1 |
APN1 | AAEL009108 | C | A | 4.1 | 145 | 55.1 | 98 | 51.9 | 106 | 2539 | 847 | A- > S | |
APN2 | AAEL003227 | C | T | 26.6 | 30 | 63.6 | 11 | 88.9 | 9 | 2240 | 747 | T- > I | |
APN2 | AAEL005808 | C | A | 30.4 | 46 | 73.3 | 45 | 91.4 | 70 | 2289 | 763 | M- > I | Cry4Ba [40] |
AAEL005808 | C | T | 31.4 | 51 | 85.7 | 91 | 95.5 | 110 | 2725 | 909 | V- > I | Cry4Ba [40] | |
AAEL005808 | C | T | 15.5 | 103 | 77.7 | 130 | 75.7 | 107 | 1762 | 588 | A- > T | Cry4Ba [40] | |
AAEL005808 | T | G | 14.5 | 117 | 84.7 | 111 | 89.4 | 132 | 1145 | 382 | E- > A | Cry4Ba [40] | |
APN2 | AAEL005821 | A | G | 5.5 | 255 | 50.0 | 82 | 63.3 | 150 | 1660 | 554 | T- > A | |
AAEL005821 | T | C | 5.0 | 260 | 56.1 | 98 | 65.0 | 183 | 1646 | 549 | M- > T | ||
AAEL005821 | G | A | 10.1 | 179 | 71.6 | 88 | 78.5 | 158 | 1459 | 487 | D- > N | ||
APN4 | AAEL007204 | C | T | 20.2 | 263 | 67.4 | 307 | 70.7 | 314 | 167 | 56 | T- > M | |
AAEL007204 | G | C | 40.0 | 190 | 93.2 | 294 | 95.8 | 239 | 216 | 72 | E- > D | ||
AAEL007204 | C | T | 33.8 | 142 | 93.9 | 197 | 92.7 | 220 | 283 | 95 | H- > Y | ||
APN4 | AAEL012774 | C | T | 43.4 | 459 | 88.3 | 677 | 86.9 | 540 | 311 | 99 | G- > R | Cry11Aa [46] |
APN5 | AAEL002696 | A | G | 23.1 | 65 | 56.3 | 48 | 64.6 | 65 | 472 | 158 | K- > E | |
AAEL002696 | G | A | 57.7 | 71 | 100.0 | 66 | 100.0 | 59 | 2380 | 794 | V- > M | ||
AAEL002696 | C | A | 17.8 | 90 | 66.7 | 42 | 60.4 | 48 | 2432 | 811 | A- > E | ||
AAEL002696 | G | A | 12.3 | 57 | 70.5 | 44 | 70.0 | 50 | 746 | 249 | R- > K | ||
APN5 | AAEL003666 | A | G | 24.6 | 126 | 63.9 | 72 | 70.8 | 106 | 1814 | 605 | V- > A | |
AAEL003666 | C | A | 16.9 | 83 | 64.9 | 74 | 73.0 | 89 | 595 | 199 | A- > S | ||
APN7 | AAEL007201 | A | G | 25.2 | 163 | 76.1 | 46 | 96.4 | 28 | 2219 | 740 | N- > S | |
Cadherin | AAEL018140 | T | A | 12.1 | 33 | 43.9 | 57 | 58.7 | 63 | 790 | 160 | H- > L | Cry11Aa [15] |
α-amylase | AAEL000642 | A | T | 24.5 | 49 | 67.9 | 56 | 47.0 | 66 | 1424 | 468 | T- > S | |
α-amylase | AAEL007673 | C | T | 18.0 | 589 | 51.3 | 493 | 75.0 | 559 | 47 | 16 | S- > N | |
α-amylase | AAEL010537 | AA | TT | 12.2 | 395 | 49.7 | 447 | 55.4 | 482 | 1706 | 564 | I- > F | |
AAEL010537 | A | G | 15.6 | 825 | 53.0 | 1078 | 58.7 | 1368 | 1324 | 437 | K- > R | ||
AAEL010537 | C | T | 16.0 | 268 | 60.5 | 248 | 64.3 | 412 | 18 | 2 | R- > W | ||
AAEL010537 | C | T | 21.7 | 1154 | 76.1 | 804 | 83.0 | 833 | 1552 | 513 | A- > V | ||
α-amylase | AAEL014710 | G | A | 9.9 | 81 | 60.0 | 35 | 56.5 | 23 | 992 | 331 | A- > V | |