Primer | Sequence 5′- 3′ | No. of differences | Position of the conflict | SMRT | SBS | Sanger |
---|---|---|---|---|---|---|
Aocu1FS1 | ACGCAATTTTGAATGCGAGTC | 1 | 29,164 | A | G | G |
Aocu1RS1 | AAGCGCCACCCATCTTTACA | |||||
Aocu2FS2 | TCCAAGATCAACCGTTGGAACA | 1 | 45,841 | C | T | T |
Aocu2RS2 | TCTTTGTGCCTCACCACCTG | |||||
Aocu3FS3 | GGCAGTTGGTACAAGAGCGA | 1 | 94,414 | A | C | C |
Aocu3RS3 | AAATTCCGGTGGTGGTACGG | |||||
Aocu45FS4 | ACAGTTGATGGAAGCTATGAAGG | 2 | 227,147 | A | C | C |
Aocu45RS4 | ACGGTTGTTGGGAATCATGG | 228,403 | A | G | G | |
Aocu6FD5 | ACTGCAGCTAATCCAACGGA | 1 | 332,224/5 | G | - | - |
Aocu6RD5 | TTCAAGTGTTCCACGTCGGT | |||||
Aocu7FS6 | TCAGCATCCGGTTATGCTCC | 1 | 460,047 | G | A | A |
Aocu7RS6 | GTTGGATGCCACTCGAAGGA | |||||
Aocu8FS7 | TCTTGTCTTGACCACCCCAA | 1 | 584,955 | A | G | G |
Aocu8RS7 | CAGCAAGTGTTTGACTCGCA | |||||
Aocu910FS8 | AAATCAGTTGCTGCATTAAGAGGT | 2 | 904,938 | G | C | S* |
Aocu910RS8 | ACTGGGAGTATCGATTGCAGG | 904,961 | C | A | M* | |
Aocu11FS9 | TTAGATAGTGCGGCAAGGGG | 1 | 927,019 | G | A | R* |
Aocu11RS9 | AACGCACCGAATCATTTCGC | |||||
Aocu12-FDI10 | GTCGATGCGCAAGCATAACC | 4 | 972,742/3 | T | - | - |
Aocu12-RDI10 | TCTAGGAGGAACACCATCACG | 974,678/9 | -- | AG | AG | |
974,999/975,000 | -- | CT | CT | |||
975,166/7 | -- | AG | AG | |||
Aocu16-22FDI11 | TGCTAGCTGACCTTATGGGAC | 7 | 976,093/4 | T | - | - |
Aocu16-22RDI11 | GACGTTTAGGCGAAGTAGTCG | 976,419 | - | A | A | |
976,451/2 | T | - | - | |||
976,520/1 | G | - | - | |||
976,525 | - | T | T | |||
976,634/5 | T | - | - | |||
977,480 | - | T | T | |||
Aocu23FS12 | GCAATACGACCAACCAAGCG | 1 | 1,091,760 | T | C | Y* |
Aocu23RS12 | AATGCGCCAATTCCAAAACG | |||||
Aocu24FS13 | GACCAACGTTTCTCGCATGG | 1 | 1,410,995 | A | G | G |
Aocu24RS13 | TGACCACTTAGGTAATCGTCGT | |||||
Aocu25FS14 | AACTTGGTCCATGTGCCTCT | 1 | 1,443,728 | A | G | G |
Aocu25RS14 | ATGAGGCTACCATTACCCGC | |||||
Aocu26FS15 | ACCTCGATTGTTCCACCAGC | 1 | 1,471,015 | C | T | Y* |
Aocu26RS15 | AAGTGCTCGCTTACGTCTGG | |||||
Aocu278FSI16 | TTGCTTGGTTAGCTCCTCCC | 2 | 1,576,028 | T | A | W* |
Aocu278RSI16 | TAGGTGTGCGTCCTGAAGGT | 1,577,778 | - | T | T |