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Table 1 Summary of the BLASTX (BLSATP) search analysis of P. promelas unique sequences

From: Transcriptome analysis of epithelioma papulosum cyprini cells after SVCV infection

Database

Hits*

Unique protein

% of total unique proteins

NR1

25596

17642

 

Uniprot1

19642

13351

 

Refseq/Ensembl

   

Zebrafish

25910

15612

36.49% of 42787

Medaka

23006

12508

50.69% of 24674

Tetraodon

22059

12196

52.76% of 23118

Fugu

22539

14352

30.00% 0f 47841

Stickleback

22919

12934

46.90% of 27576

Human

21802

13534

12.97% of 104310

Mouse

21782

12422

24.15% of 51437

Chicken

21103

10178

62.24% of 16354

Cumulative unique2

27049

17396

 
  1. The version of indicated species of protein database is the ensemble release-73(ftp://ftp.ensembl.org/pub/release-73/fasta/).
  2. *Number of significant alignments using all P. promelas unique sequences as queries to search the listed databases. 1Number of significant alignments using all P. promelas unique sequences as queries to search EMBOSS with BLASTp. 2Cumulative unique totals were derived from the sum of unique gene/protein identities across all listed species.
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BMC Genomics

ISSN: 1471-2164

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