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Table 1 RNA sequencing results

From: RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages

Strain AltDE AltDE1
Growth Conditions RMa-13°C RMa-25°C MMGb-25°C STRc-25°C RMa-13°C RMa-25°C MMGb-25°C STRc-25°C
Total number of reads 3,444,176 11,503,336 8,986,648 2,995,620 6,230,679 7,840,241 13,514,524 14,695,977
Reads mapped to ribosomal operons 3,206,468 10,852,030 8,764,784 2,940,326 5,812,308 7,342,658 13,314,002 14,668,090
Percentage of reads mapped to ribosomal operons 93.1 94.3 97.5 98.2 93.2 93.7 98.5 99.8
Chromosome length (nt) 4,480,937 4,643,844
Average coverage per nucleotided 8.7X 14.8X 5.0X 1.2X 8.9X 10.5X 4.1X 0.6X
Percentage of CDS expressed 76.9 90.3 86.5 86.2 82.7 88.8 87.6 43.7
Reads mapped in the chromosome 387,708 661,306 221,864 55,294 412,700 487,487 191,820 27,243
Reads mapped to CDS 258,240 454,504 160,098 40,566 275,125 325,206 139,930 21,824
Percentage of reads mapped to IR 33.4 30.2 27.8 26.6 33.3 33.3 27.1 19.8
Percentage of reads mapped to ribosomal proteinse 21 22.9 11.2 6 20.9 20.1 4 1.2
Plasmid length (nt) -- -- -- -- 303,282
Average coverage per nucleotide -- -- -- -- 1.9X 3.3X 2.9X 0.2X
Reads mapped to plasmid -- -- -- -- 5,671 10,096 8,702 644
  1. CDS, coding DNA sequence; IR, intergenic region.
  2. anutrient rich marin medium.
  3. bminimal medium with 1% glucose.
  4. cminimal medium with 1% glucose followed by two days of minimal medium without glucose.
  5. dnumber of mapped reads X 100/number of nucleotides in the chromosome.
  6. epercentage of CDS.