| Average quality (interquartile range) | GC content (percent) | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | Number of reads | Before filtering | After filtering | Before filtering | After filtering | ||||||||||||||||
Stage | Before filtering | After filtering | Percent retained | Base 5 | Base 50 | Base 95 | Base 5 | Base 50 | Base 95 | Base 5 | Base 50 | Base 95 | Base 5 | Base 50 | Base 95 | ||||||
Egg | 29899982 | 24924408 | 83.4% | 36.7 | (4) | 34.1 | (7) | 24.9 | (25) | 37.7 | (2) | 36.6 | (5) | 29.3 | (8) | 40.0 | 41.1 | 41.9 | 38.9 | 39.8 | 40.6 |
Larvae | 28913860 | 23506167 | 81.3% | 36.7 | (4) | 33.8 | (6) | 23.5 | (33) | 37.7 | (2) | 36.4 | (5) | 28.2 | (8) | 41.2 | 42.8 | 44.2 | 40.1 | 41.4 | 42.8 |
Pupae | 31954342 | 26582294 | 83.2% | 36.8 | (4) | 34.2 | (7) | 24.6 | (33) | 37.7 | (2) | 36.6 | (5) | 29.0 | (8) | 40.6 | 42.0 | 42.8 | 39.4 | 40.6 | 41.4 |
Male | 41546048 | 35350086 | 85.1% | 37.4 | (2) | 35.1 | (5) | 25.8 | (17) | 38.2 | (2) | 37.3 | (4) | 29.8 | (7) | 39.7 | 41.5 | 42.4 | 38.5 | 40.0 | 41.1 |
Female | 35096592 | 29240854 | 83.3% | 36.9 | (4) | 34.4 | (7) | 24.7 | (33) | 37.8 | (2) | 36.7 | (5) | 29.0 | (8) | 39.7 | 41.9 | 42.8 | 38.5 | 40.5 | 41.4 |
Mated Female | 35318474 | 29909305 | 84.7% | 36.9 | (4) | 34.5 | (7) | 25.3 | (18) | 37.8 | (2) | 36.7 | (5) | 29.4 | (8) | 38.5 | 40.9 | 41.9 | 37.4 | 39.6 | 40.8 |
Total | 202729298 | 169513114 | 83.6% | 36.9 | (3.5) | 34.4 | (6.5) | 24.9 | (26) | 37.8 | (2) | 36.7 | (4.8) | 29.2 | (7.8) | 39.9 | 41.7 | 42.6 | 38.7 | 40.3 | 41.3 |