Figure 10
From: Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
Genomic relationship between the 65 sequenced animals. Genomic relationship between the 65 sequenced animals was estimated using array genotypes (autosomal SNPs with known position) filtered separately for Cluster 1 (Brown Swiss, Braunvieh, Original Braunvieh; lower left corner of heat map) and Cluster 2 (Simmental, Swiss Fleckvieh, Holstein, Red Holstein; upper right corner of heat map). After filtering, the merged data set consisted of 38,317 common SNPs. The off-diagonals reflect the estimated pairwise identities by descent.