Figure 2

Average transition/transversion ratios over all animals using single sample variant identification (a) and transition/transversion ratios for variant identification with single and multi sample detection methods, as well as combined over all multi sample detection methods (b). Average transition/transversion ratios for variant identification with single sample detection methods using Platypus, Platypus Primitives, Samtools, UnifiedGenotyper and HaplotypeCaller (n = 65 samples, BTA1-29) are shown in (a). Transition / transversion ratios for variant identification with single and multi sample detection methods using Platypus, Platypus Primitives, Samtools, UnifiedGenotyper and HaplotypeCaller (n = 65 samples, BTA1-29) and a consensus data set (variants called by Platypus Primitives + Samtools + UnifiedGenotyper + HaplotypeCaller) are shown in (b).