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Table 1 Coverage of BV-2 N-glycoproteome by various approaches

From: Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry

Experimental scheme 3 FDR < 1% &18O deamidation N!P-[S/T/rarely C] motif
Approach Replicates Redundant N-glycosites Unique N-glycosites Unique N-glycoproteins Redundant N-glycosites Unique N-glycosites Unique N-glycoproteins
WCC Biological replicate 1 1250 545 297 1052 396 231
Biological replicate 2 1501 576 305 1342 473 257
Combined 2751 845 441 2394 605 330
CMC Biological replicate 1 9536 1958 927 7380 1111 594
Biological replicate 2 7223 1760 845 5509 1017 538
Combined 16759 2420 1116 12889 1267 671
Total 1450 760