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Table 1 Number of HD-Zip genes observed (O), expected (E) and retained (R) among five angiosperm species

From: Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress

 

HD-Zip I (5)a

HD-Zip II (4)a

HD-Zip III (4)a

HD-Zip IV (4)a

Total - each species

Species

O

E

R (%)

O

E

R (%)

O

E

R (%)

O

E

R (%)

O

E

R (%)

Arabidopsis thaliana (12)b

17

60

28.3

9

48

18.8

5

48

10.4

16

48

33.3

47

204

23.0

Vitis vinifera (3)b

14

15

93.3

7

12

58.3

4

12

33.3

8

12

66.7

33

51

64.7

Glycine max (12)b

36

60

60.0

24

48

50.0

11

48

22.9

30

48

62.5

101

204

49.5

Medicago truncatula (6)b

15

30

50.0

7

24

29.2

6

24

25.0

13

24

54.2

41

102

40.2

Oryza sativa (4)b

14

20

70.0

12

16

75.0

4

16

25.0

11

16

68.8

41

68

60.3

Total - Among five species

96

185

51.9

59

148

39.9

30

148

20.3

78

148

52.7

263

629

41.8

  1. aNumber of ancient angiosperm clades observed in each HD-Zip subfamily.
  2. bNumber of genes expected in each ancient angiosperm clade based on the history of whole genome duplication events.