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Table 2 Experimental set-up and summary of read-count data from RNA-Seq analysis

From: Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress

Treatment

Time point (hr)

Replicate (#)

Lane on HiSeq 2000

Total reads

Uniquely mapped reads

Uniquely mapped reads (%)

Control

0

1

4

10,150,369

8,047,650

79.3%

Control

0

2

4

11,849,953

9,207,421

77.7%

Control

0

3

3

11,272,789

9,164,808

81.3%

Dehydration

1

1

3

6,875,669

5,571,406

81.0%

Dehydration

1

2

3

6,744,882

4,948,665

73.4%

Dehydration

1

3

3

8,650,675

6,612,402

76.4%

Dehydration

6

1

3

11,828,271

9,624,573

81.4%

Dehydration

6

2

3

11,355,361

8,599,941

75.7%

Dehydration

6

3

4

10,038,099

8,009,975

79.8%

Dehydration

12

1

4

9,270,260

7,194,931

77.6%

Dehydration

12

2

4

5,555,797

4,050,429

72.9%

Dehydration

12

3

4

5,105,827

4,087,108

80.0%

Salt

1

1

2

38,214,261

30,683,738

80.3%

Salt

1

2

2

9,046,880

7,428,387

82.1%

Salt

1

3

2

9,423,474

7,202,416

76.4%

Salt

6

1

2

7,445,356

5,580,211

74.9%

Salt

6

2

2

5,890,968

4,422,058

75.1%

Salt

6

3

2

25,296,306

14,687,424

58.1%

Salt

12

1

2

7,481,184

5,253,438

70.2%

Salt

12

2

3

14,201,579

11,170,436

78.7%

Salt

12

3

4

13,124,265

9,645,045

73.5%

   

Total

238,822,225

181,192,462

75.9%

   

Average

11,372,487

8,628,212

76.5%