Skip to main content

Advertisement

Table 2 Experimental set-up and summary of read-count data from RNA-Seq analysis

From: Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress

Treatment Time point (hr) Replicate (#) Lane on HiSeq 2000 Total reads Uniquely mapped reads Uniquely mapped reads (%)
Control 0 1 4 10,150,369 8,047,650 79.3%
Control 0 2 4 11,849,953 9,207,421 77.7%
Control 0 3 3 11,272,789 9,164,808 81.3%
Dehydration 1 1 3 6,875,669 5,571,406 81.0%
Dehydration 1 2 3 6,744,882 4,948,665 73.4%
Dehydration 1 3 3 8,650,675 6,612,402 76.4%
Dehydration 6 1 3 11,828,271 9,624,573 81.4%
Dehydration 6 2 3 11,355,361 8,599,941 75.7%
Dehydration 6 3 4 10,038,099 8,009,975 79.8%
Dehydration 12 1 4 9,270,260 7,194,931 77.6%
Dehydration 12 2 4 5,555,797 4,050,429 72.9%
Dehydration 12 3 4 5,105,827 4,087,108 80.0%
Salt 1 1 2 38,214,261 30,683,738 80.3%
Salt 1 2 2 9,046,880 7,428,387 82.1%
Salt 1 3 2 9,423,474 7,202,416 76.4%
Salt 6 1 2 7,445,356 5,580,211 74.9%
Salt 6 2 2 5,890,968 4,422,058 75.1%
Salt 6 3 2 25,296,306 14,687,424 58.1%
Salt 12 1 2 7,481,184 5,253,438 70.2%
Salt 12 2 3 14,201,579 11,170,436 78.7%
Salt 12 3 4 13,124,265 9,645,045 73.5%
    Total 238,822,225 181,192,462 75.9%
    Average 11,372,487 8,628,212 76.5%