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Table 2 Overview of assembled transcriptomes in S. senegalensis and S. solea

From: De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray

  S. senegalensis S. solea
  v3 v4 v1
  Transcripts % Transcripts % Transcripts %
Transcripts 252,416 - 697,125 - 523,637 -
Artifacts2 nc - 7,095 1.02 10,086 1.92
Valid transcripts 252,416 100.00 701,767 100.00 531,463 100.00
>500pb 37,593 14.90 156,083 22.24 165,860 31.22
>200pb 168,914 66.92 385,411 54.92 338,967 63.89
Longest transcript 6,050 - 40,163 - 30,526 -
Transcripts with ortholog1 81,348 32.23 147,536 21.02 121,696 22.90
Different orthologous IDs 41,792 51.37 45,063 30.54 38,402 31.56
Complete ORFs 6,742 8.31 39,727 26.93 52,051 42.77
Different, complete ORFs 4,376 5.38 18,738 12.70 22,683 18.64
C-terminus 14,757 18.14 27,080 18.35 19,579 16.09
N-terminus 11,298 13.88 27,638 18.73 25,131 20.65
Internal 47,529 58.43 53,091 35.99 24,935 20.49
Putative ncRNAs 539 0.21 1,252 0.18 1,075 0.20
Transcripts without ortholog1 171,067 67.56 545,491 77.73 408,692 76.90
Putative new transcripts 22,612 13.21 39,812 7.30 34,194 8.37
Non-redundant new transcripts nc 14,451 2.65 15,603 3.55
Unknown 147,916 86.48 505,679 92.70 374,498 91.63
Reference transcriptome nc v4.1: 59,514 8.48 v1.1: 54,005 10.16
  1. The values were calculated using FullLengtherNext software. The minimum number of transcripts that can be considered as a reference transcriptome is shown in bold.
  2. 1Percentages for subclassifications of this category were calculated using this line as 100% reference.
  3. 2Artifacts refer mainly to misassemblies and chimeric contigs.
  4. nc: Non-calculated.