Skip to main content

Table 1 The REs recognition sites and tag numbers of RAD and 2b-RAD in simulated species

From: An improved 2b-RAD approach (I2b-RAD) offering genotyping tested by a rice (Oryza sativa L.) F2 population

Species

Size (G)

EcoRI

SbfI

HindIII

BsaXI

AlfI

Version

Arabidopsis thaliana

0.12

37057

627

67057

39826

12601

TAIR9

Cucumis sativus

0.24

69944

1197

94344

65249

23762

v2.3

Theobroma cacao

0.33

90253

1572

173770

81810

39800

CIRAD_v0.9

Oryza sativa

0.37

88471

5541

110084

180848

83465

IRGSP-7.0

Vitis vinifera

0.49

143785

2594

228694

155893

62070

Genoscope

Cajanus cajan

0.61

161249

1652

232261

162320

62119

v1.0

Solanum tuberosum

0.73

233925

2957

273063

212095

70042

v3.4

Sorghum bicolor

0.74

200543

11693

308083

379985

151244

phytozome_v7.0

Glycine max

0.97

309451

3844

422507

289940

140204

phytozome_v7.0

Zea mays

2.06

490315

50773

768456

1151014

444673

AGI_5a

Total

6.65

1824993

82450

2678319

2718980

1089980

 

Average

0.67

182499

8245

267831

271898

108998

 

Average tag number

 

364998

16490

535663

271898

108998

 

Drosophila melanogaster

0.17

44863

2948

45913

58189

50403

RGSC3.4

Apis mellifera

0.23

97174

551

49977

58053

21237

AnoCar2.0

Anopheles gambiae

0.27

53807

3164

87297

100574

80148

Galgal4

Takifugu rubripes

0.39

75238

20718

95182

210480

103943

FUGU4

Bombyx mori

0.48

112113

2041

121288

96793

47329

AgamP3

Gallus gallus

1.05

277001

48010

403125

453890

400359

NCBIM37

Danio rerio

1.41

255801

30677

427420

426194

339437

v1.0

Mus musculus

2.72

758802

60302

842075

1331056

607106

2.0

Rattus norvegicus

2.72

817664

58283

818955

1257212

595706

r5.27

Homo sapiens

3.10

778227

77095

837133

1292381

583536

v2.0

Total

12.54

3270690

303789

3728365

5284822

2829204

 

Average

1.17

327069

30378

372836

528482

282920

 

Average tag number

 

654138

60758

745673

528482

282920

Â