Figure 2

Read mapping against representative segments of Influenza genome. In A), reads resulting from a representative run of 454 Titanium sequencing, Ion Torrent PGM sequencing, and Illumina MiSeq sequencing were mapped to the reference Influenza A H1NI segment 5 [NC_002019.1], using CLC Genomics Workbench version 6.0.4 at default parameters, whereas in B), they were mapped against segment 8 [NC_002020.1]. In B), no Roche-454 reads mapped to the reference. In both A) and B), coordinates of reference genome segment are displayed along the top and G/C content is graphed below reference in pink.