Skip to main content

Advertisement

Springer Nature is making SARS-CoV-2 and COVID-19 research free. View research | View latest news | Sign up for updates

Table 2 Cross-platform comparison of read mapping to Influenza A H1N1

From: Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood

Platform #/Replicates Reads mapped (low) Reads mapped per 100,000a Reads mapped (med) Reads mapped in pairsa Fraction of reference covereda
PGM 1 3 11/20/ND .61/.80/ND 5/16/ND NA .07/.15/ND
PGM 2 3 21/19/18 .87/1.3/.86 14/11/10 NA .12/.09/.14
Roche 2 1/0 .17/0 0/0 NA .03/-
MiSeq 1 3 308/322/323 .82/.90/1.0 269/311/318 66/72/82 .79/.95/.80
MiSeq 2 3 811/942/912 2.2/2.4/2.2 741/934/914 296/216/248 .95/.95/.97
  1. a: Reads mapped at low stringency.