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Table 3 De novo assembly and BLASTn statistics of Influenza A sequence reads

From: Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood

Platform

Assembler

# total contigs

# specific contigs

PGM 1

MIRA

26,171

0

PGM 2

MIRA

30,719

0

MiSeq 1

Velvet

841,384

18

MiSeq 2

Velvet

768,912

11

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BMC Genomics

ISSN: 1471-2164

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