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Table 2 Cotton Hsf protein functional domain analysis

From: Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum)

Gene name

Gene locus in G.ramondii

Protein type (A-B-C)

DBD

Linker length

HR-A/B (hydrophobic heptad repeats)

NLS (nuclear localization signal)

NES (nuclear export signal)

AHA (C-terminal activator)

GhHsf7

Gorai.003G183900

A1a

41-134

29

163-214

(248)KKRRLK

(501)LTEQMGLL

(457)FWEDLLV

GhHsf4

Gorai.003G053300

A1b

20-113

36

139-177

(224)KKRRLSR

(488)LTEQMGLR

(437)DVFWEQFL

GhHsf25

Gorai.008G225200

A1c

41-134

29

163-216

(248)KKRR

(497)LTEQMGLL

(450)VNSPFFHDLF

GhHsf21

Gorai.007G033300

A1d

42-135

29

164-207

(249)KKRR

 

(452)DSSSFWDDLI

GhHsf10

Gorai.004G257000

A1e

21-114

26

140-178

(225)KKRR

(489)LTEQMGLL

(437)DVFWEKFL

GhHsf38

Gorai.013G183500

A1f

21-114

23

137-184

(222)KKRRLHR

 

(401)DTFWEHFL

GhHsf39

Gorai.013G220400

A2

46-139

23

162-213

(243)RKRR

(369)LVDQMGYL

(320)ETLWEELVHEDL

GhHsf17

Gorai.006G158000

A3

47-140

20

160-191

(242)RMRRK

 

(365)PGYFISSPEDL (396)DVWSMDFDATV

GhHsf34

Gorai.011G036400

A4a

10-103

14

117-180

(205)RKRR

(390)LAEQMGHL

(339)DIFWEQFLTE

GhHsf37

Gorai.012G044200

A4b

10-103

18

121-175

(198)KKRK

 

(246)TLFLEIGETIG (372)GFWERFLTEV

GhHsf32

Gorai.010G240800

A4c

10-103

21

122-174

(205)RKRR

(371)LTEQMGHL

(319)DGFWEQFLTE

GhHsf18

Gorai.006G224000

A5a

20-113

17

130-185

(217)KKRR

(261)LRLELS

(358)SPSLTMMSQL (426)DVFWERFLTE

GhHsf13

Gorai.005G027500

A5b

21-114

12

126-189

(216)KKRR

(257)LRLELS

(375)SPILTRMSQP (443)DVFWEQFLTE

GhHsf36

Gorai.011G168400

A6a

38-131

30

161-202

(236)KKRQRR

(345)LVEQLRYL

(270)EVTELDKLVM (310)DEGFWDDLMDGDTH

GhHsf19

Gorai.006G242400

A6b

39-132

34

156-182/216-243

(238)KRRRR

(328)LVEQLGFL

(264)EVVELDGMVM (295)DEGFWNDLLND

GhHsf8

Gorai.004G076900

A7a

43-136

36

172-246

(242)KKRRR

(350)LADRLGYL

(219)NPAFLRQLM (318)DEGFWEELLNE

GhHsf23

Gorai.007G139600

A7b

40-133

32

165-230

(240)RKRMR

 

(217)NPSFLQQLM (320)DEGFWEELLNE

GhHsf40

Gorai.N013300

A8a

1-83

37

120-142

(188)KENNWR

(361)LTDQMGHL

(253)DFWMNIDFVKV (279)DDGAWEKLLL

GhHsf24

Gorai.008G170800

A8b

11-104

35

139-161

(103)RRK

 

(267)DFWMDIDFVKA (293)DDGAWEKLL

GhHsf28

Gorai.009G032300

A9a

113-206

24

230-269

(294)RLTKKRK

(418)IYLELEDL

(429)KQCSWGGFASEL

GhHsf1

Gorai.001G012700

A9b

80-173

22

195-240

(274)KKFKKRRR

(329)IYVELKQL

 

GhHsf12

Gorai.004G284200

A9c

32-125

22

137-214

(253)RKKRR

(468)VYLELEDL

(479)KPSNLTGFVNDL

GhHsf3

Gorai.003G023500

B1a

6-99

53

152-195

(258)KKRAR

  

GhHsf22

Gorai.007G053900

B1b

6-99

44

143-189

(257)KKR

  

GhHsf35

Gorai.011G105700

B1c

6-99

46

145-184

(98)RRK

  

GhHsf20

Gorai.007G010900

B2a

23-116

47

163-203

(257)KRAR

  

GhHsf6

Gorai.003G160600

B2b

25-118

46

164-199

(262)KRVRR

  

GhHsf9

Gorai.004G208800

B2c

24-117

60

167-200

(263)KRVRR

  

GhHsf26

Gorai.008G244400

B2d

17-103

51

154-187

(248)KRLRK

  

GhHsf5

Gorai.003G091700

B3

21-114

36

150-177

(216)RKRKRKR

  

GhHsf30

Gorai.010G020700

B4a

18-104

74

178-212

(276)KKR

(305)IGLNLM

 

GhHsf29

Gorai.009G213100

B4b

21-114

74

185-220

(325)KKR

(351)LRLNLM

 

GhHsf16

Gorai.006G125000

B4c

17-110

38

148-182

(160)RLRRK

  

GhHsf14

Gorai.005G102000

B4d

21-114

67

181-212

(193)KLRRR

(333)LGLNLM

 

GhHsf2

Gorai.002G135200

B4e

21-114

57

171-204

(297)KKR

(324)LSCIYR

 

GhHsf33

Gorai.011G027400

B5a

20-125

43

168-200

(182)RREK

  

GhHsf15

Gorai.006G087100

B5b

22-123

16

139-180

(105)KHEKFKR

  

GhHsf31

Gorai.010G070900

C1a

9-102

15

117-157

(188)KKRR

  

GhHsf11

Gorai.004G280100

C1b

9-102

29

131-163

(198)KRR

  

GhHsf27

Gorai.009G024700

C1c

8-101

10

111-163

(194)KKRR

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