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Table 1 Summary statistics for sequencing and CNVs of 12 individuals

From: Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing

Chicken abbreviationa Numbers of mapped reads Depth Coverage (%) Autosome reads per 5 kb windowb Autosome reads STDEV Duplications Deletions Sequence covered (Mb)
BY 102,002,937 9.7 97.0 489.29 110.73 1,319 602 34.1
CS 85,383,494 8.2 96.9 409.93 101.42 1,132 663 26.8
DX 129,847,015 12.4 97.4 623.50 130.46 552 820 8.2
LX 105,152,881 10.0 97.3 503.82 112.74 898 821 11.7
RIR 102,464,756 9.8 97.3 490.96 108.21 578 669 8.3
RJF 105,517,587 10.1 97.2 504.23 113.52 702 620 9.8
SG 85,987,827 8.2 96.6 412.27 87.66 470 553 7.2
SK 95,322,371 9.1 97.1 457.21 100.61 773 657 12.3
TB 107,535,104 10.3 97.3 515.68 108.07 607 679 8.5
WC 119,116,969 11.4 97.4 572.35 121.39 710 768 9.8
WL 118,689,980 11.3 97.5 567.18 118.63 203 441 3.3
WR 130,307,416 12.4 97.6 625.01 132.32 224 477 3.3
  1. aBY Beijing You, CS Cornish, DX Dongxiang, LX Luxi Game, RIR Red Island Rhode, RJF Red Jungle Fowl, SG Shouguang, SK Silkie, TB Tibetan, WC Wenchang, WL White Leghorn, WR White Plymouth Rock.
  2. bThe number of reads per 5 kb windows after GC correction.