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Table 3 Proportion (%) of secreted proteins and orphans a

From: Interspecific and host-related gene expression patterns in nematode-trapping fungi

Category Ao(Mh) Ao(Hs) Ad(Mh) Ad(Hs) Mc(Hs)
Secreted proteins      
All isotigs 8.4 9.4 7.8 8.6 9.1
Top 500 most expressed isotigs 12.2 12.6 12.6 10.8 13.8
(Pb) (0.00031) (0.00070) (0.00002) (0.01205) (0.00008)
Orphans c      
All isotigs 6.6 7.1 8.1 7.5 6.9
Top 500 most expressed isotigs 7.8 7.6 12.8 9.6 9.2
(Pb) (0.03792) (0.07609) (0.00004) (0.01176) (0.00818)
  1. aProportion of secreted proteins and orphans among all identified isotigs (i.e. transcripts) and among the 500 most expressed isotigs in each sample. The samples are: A. oligospora infecting M. hapla (Ao(Mh)), A. oligospora infecting H. schachtii (Ao(Hs)), A. dactyloides infecting M. hapla (Ad(Mh)), A. dactyloides infecting H. schachtii (Ad(Hs)), and M. cionopagum infecting H. schachtii (Mc(Hs)).
  2. bThe probability (P) of observing a given number of isotigs within the functional category by chance using the hypergeometric distribution.
  3. cIsotigs that lack known homologs and do not contain any Pfam domains.